pypi: sed | Projects | Ecosyste.ms: Papers

10.1016/j.celrep.2019.05.026

ZIC3 Controls the Transition from Naive to Primed Pluripotency
Cited by: 41
Author(s): Shen Hsi Yang, Munazah Andrabi, Rebecca Biss, Syed Murtuza Baker, Mudassar Iqbal, Andrew D. Sharrocks
Software Mentions: 11
Published: over 5 years ago

10.1371/journal.pone.0152747

The Identification of Novel Diagnostic Marker Genes for the Detection of Beer Spoiling Pediococcus damnosus Strains Using the BlAst Diagnostic Gene findEr
Cited by: 32
Author(s): Jürgen Behr, Andreas Geißler, Jonas Schmid, Anja Zehe, Rudi F. Vogel
Software Mentions: 9
Published: over 8 years ago

10.1093/gigascience/giab062

Genetic demultiplexing of pooled single-cell RNA-sequencing samples in cancer facilitates effective experimental design
Cited by: 16
Author(s): Lukas M. Weber, Ariel A. Hippen, Peter Hickey, Kristofer C. Berrett, Jason Gertz, Jennifer A. Doherty, Casey S. Greene, Stephanie C. Hicks
Software Mentions: 8
Published: about 3 years ago

10.1590/1678-4685-GMB-2016-0230

Approaches for in silico finishing of microbial genome sequences
Cited by: 17
Author(s): Frederico Schmitt Kremer, Alan J. A. McBride, Luciano da Silva Pinto
Software Mentions: 8
Published: about 7 years ago

10.1371/journal.pone.0023947

Rational Design of Temperature-Sensitive Alleles Using Computational Structure Prediction
Cited by: 19
Author(s): Christopher S. Poultney, Glenn L. Butterfoss, Michelle Gutwein, Kevin Drew, David Gresham, Kristin C. Gunsalus, Dennis Shasha, Richard Bonneau
Software Mentions: 8
Published: about 13 years ago

10.1155/2012/876976

A High-Throughput Computational Framework for Identifying Significant Copy Number Aberrations from Array Comparative Genomic Hybridisation Data
Cited by: 1
Author(s): Ian Roberts, Stephanie A. Carter, Cinzia G. Scarpini, Konstantina Karagavriilidou, Jenny Barna, M. Calleja, Nicholas Coleman
Software Mentions: 7
Published: about 12 years ago

10.1007/s00248-018-1209-x

Rapid Microbial Community Changes During Initial Stages of Pine Litter Decomposition
Cited by: 35
Author(s): Marcin Gołębiewski, Agata Tarasek, Marcin Sikora, Edyta Deja-Sikora, Andrzej Tretyn, Maria Niklińska
Software Mentions: 7
Published: over 6 years ago

10.7717/peerj.5299

BTW—Bioinformatics Through Windows: an easy-to-install package to analyze marker gene data
Cited by: 2
Author(s): Daniel Morais, Luiz Fernando Würdig Roesch, Marc Redmile‐Gordon, Fausto G. dos Santos, Petr Baldrián, Fernando Dini Andreote, Victor Satler Pylro
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pcbi.1008645

Ten simple rules for getting started with command-line bioinformatics
Cited by: 7
Author(s): Parice A. Brandies, Carolyn J. Hogg
Software Mentions: 7
Published: almost 4 years ago

10.1016/j.dib.2020.105757

The molecular entities in linked data dataset
Cited by: 1
Author(s): Dominik Tomaszuk, Łukasz Szeremeta
Software Mentions: 6
Published: over 4 years ago

10.12688/f1000research.16301.2

Increasing workflow development speed and reproducibility with Vectools
Cited by: 0
Author(s): Tyler Weirick, Raphael Müller, Shizuka Uchida
Software Mentions: 5
Published: about 6 years ago

10.1186/1471-2164-12-S3-S6

ApicoAlign: an alignment and sequence search tool for apicomplexan proteins
Cited by: 5
Author(s): Jamshaid Ali, Umadevi Paila, Akash Ranjan
Software Mentions: 5
Published: almost 13 years ago

10.1186/1471-2164-8-191

C-terminal motif prediction in eukaryotic proteomes using comparative genomics and statistical over-representation across protein families
Cited by: 15
Author(s): Ryan E Austin, Nicholas J. Provart, Sean R. Cutler
Software Mentions: 5
Published: over 17 years ago

10.3389/fgene.2019.00549

Comprehensive Review of Models and Methods for Inferences in Bio-Chemical Reaction Networks
Cited by: 32
Author(s): Pavel Loskot, Komlan Atitey, Lyudmila Mihaylova
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-70353-y

Single-cell RNA sequencing uncovers heterogenous transcriptional signatures in macrophages during efferocytosis
Cited by: 43
Author(s): Connor Lantz, Behram Radmanesh, Esther Liu, Edward B. Thorp, Jennie Lin
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0242708

Multi-objective regression test suite optimization using three variants of adaptive neuro fuzzy inference system
Cited by: 5
Author(s): Ayesha Kiran, Wasi Haider Butt, Arslan Shaukat, Muhammad Umar Farooq, Urooj Fatima, Farooque Azam, Zeeshan Anwar
Software Mentions: 4
Published: almost 4 years ago

10.3390/v11050397

RNAseq Analysis Reveals Virus Diversity within Hawaiian Apiary Insect Communities
Cited by: 24
Author(s): Laura E. Brettell, Declan C. Schroeder, Stephen J. Martin
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0187471

Path-oriented test cases generation based adaptive genetic algorithm
Cited by: 18
Author(s): Xiaoan Bao, Zijian Xiong, Na Zhang, Junyan Qian, Biao Wu, Wei Zhang
Software Mentions: 3
Published: about 7 years ago

10.12688/f1000research.3-14.v2

mfSBA: Multifractal analysis of spatial patterns in ecological communities
Cited by: 6
Author(s): Leonardo A. Saravia
Software Mentions: 3
Published: over 10 years ago

10.3389/fgene.2021.686851

RESIC: A Tool for Comprehensive Adenosine to Inosine RNA Editing Site Identification and Classification
Cited by: 4
Author(s): Dean Light, Roni Haas, Mahmoud Yazbak, Tal Elfand, Tal Blau, Ayelet T. Lamm
Software Mentions: 3
Published: over 3 years ago

10.3389/frma.2021.669675

Open Science in Kenya: Where Are We?
Cited by: 6
Author(s): Kennedy W. Mwangi, Nyabuti Mainye, Daniel O. Ouso, Kevin Esoh, Angela Muraya, Charles K. Mwangi, Careen Naitore, Pauline Karega, Gilbert Kibet-Rono, Sebastian Musundi, Jennifer Mutisya, Elizabeth Mwangi, Cavin Mgawe, Silviane A. Miruka, Caleb Kibet
Software Mentions: 3
Published: over 3 years ago

10.1186/1471-2105-9-532

Extended Newick: it is time for a standard representation of phylogenetic networks
Cited by: 90
Author(s): Gabriel Cardona, Francesc Rosselló, Gabriel Valiente
Software Mentions: 3
Published: almost 16 years ago

10.1038/s41598-018-31181-3

Characterization and induction of prophages in human gut-associated Bifidobacterium hosts
Cited by: 23
Author(s): Travis N. Mavrich, Eoghan Casey, Joana Oliveira, Francesca Bottacini, Kieran James, Charles M. A. P. Franz, Gabriele Andrea Lugli, Horst Neve, Marco Ventura, Graham F. Hatfull, Jennifer Mahony, Douwe van Sinderen
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-018-28016-6

The Biological Object Notation (BON): a structured file format for biological data
Cited by: 1
Author(s): Jan P. Buchmann, Mathieu Fourment, Edward C. Holmes
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0164023

Language-Agnostic Reproducible Data Analysis Using Literate Programming
Cited by: 2
Author(s): Boris Vassilev, Riku Louhimo, Elina Ikonen, Sampsa Hautaniemi
Software Mentions: 2
Published: about 8 years ago

10.3389/fmicb.2019.02499

A Cautionary Report for Pathogen Identification Using Shotgun Metagenomics; A Comparison to Aerobic Culture and Polymerase Chain Reaction for Salmonella enterica Identification
Cited by: 13
Author(s): Enrique Doster, Pablo Rovira, Noelle Noyes, Brandy A. Burgess, Xiang Yang, Margaret D. Weinroth, Lyndsey Linke, Roberta J. Magnuson, Christina Boucher, K. E. Belk, Paul S. Morley
Software Mentions: 2
Published: about 5 years ago

10.1107/S1600576716014965

<i>ContaMiner</i> and ContaBase: a webserver and database for early identification of unwantedly crystallized protein contaminants
Cited by: 25
Author(s): Arnaud Hungler, Afaque Ahmad Imtiyaz Momin, Kay Diederichs, Stefan T. Arold
Software Mentions: 2
Published: about 8 years ago

10.1186/s13601-018-0193-z

7th International Symposium on Molecular Allergology (ISMA 2017)
Cited by: 1
Author(s):
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0144294

Deciphering the Dynamics of Non-Covalent Interactions Affecting Thermal Stability of a Protein: Molecular Dynamics Study on Point Mutant of Thermus thermophilus Isopropylmalate Dehydrogenase
Cited by: 17
Author(s): Reetu Sharma, G. Narahari Sastry
Software Mentions: 2
Published: almost 9 years ago

10.1186/1751-0473-6-8

KBWS: an EMBOSS associated package for accessing bioinformatics web services
Cited by: 4
Author(s): Kazuki Oshita, Kazuharu Arakawa, Masaru Tomita
Software Mentions: 2
Published: over 13 years ago

10.1186/s12885-019-5883-y

The role of clonal communication and heterogeneity in breast cancer
Cited by: 32
Author(s): Ana Martín-Pardillos, Ángeles Valls Chiva, Gemma Bande Vargas, Pablo Hurtado Blanco, Roberto Piñeiro, Pedro J. Guijarro, Stefan Hümmer, Eva Bejar Serrano, Aitor Rodríguez‐Casanova, Ángel Díaz‐Lagares, Josep Castellví, Samuel Miravet-Verde, Luís Serrano, María Lluch‐Senar, Víctor Sebastián, Ana Bribián, Laura López‐Mascaraque, Rafael López‐López, Santiago Ramón y Cajal
Software Mentions: 1
Published: over 5 years ago

10.1038/ismej.2015.186

Superinfection exclusion and the long-term survival of honey bees in Varroa-infested colonies
Cited by: 83
Author(s): Gideon Mordecai, Laura E. Brettell, Stephen J. Martin, David R. Dixon, Ian M. Jones, Declan C. Schroeder
Software Mentions: 1
Published: about 9 years ago

10.1186/1471-2105-7-141

A computational approach to discovering the functions of bacterial phytochromes by analysis of homolog distributions
Cited by: 9
Author(s): Tilman Lamparter
Software Mentions: 1
Published: over 18 years ago

10.1111/pbi.13192

Multiplex restriction amplicon sequencing: a novel next‐generation sequencing‐based marker platform for high‐throughput genotyping
Cited by: 11
Author(s): Amy Bernardo, Paul St. Amand, Ha Le, Zhenqi Su, Guihua Bai
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-13-S7-S19

The parasite specific substitution matrices improve the annotation of apicomplexan proteins
Cited by: 4
Author(s): Jamshaid Ali, Shashi Rekha Thummala, Akash Ranjan
Software Mentions: 1
Published: almost 12 years ago

Ecosyste.ms: Papers

Projects: pypi: sed

Papers Mentioning sed 36