Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1002/ctm2.422

https://doi.org/10.1002/ctm2.422

Cited by: 37
Author(s): Mei Yan, Weiwei Xiao, Hao Hu, Guan-Ming Lu, Lingdan Chen, Zhun Sun, Mengdie Lü, Wenhui Ma, Ting Jiang, Yuanhong Gao, LiRen Li, Gong Chen, Zifeng Wang, Hanjie Li, Duojiao Wu, Ping‐Hong Zhou, Qibin Leng, Guangshuai Jia
Published: almost 3 years ago

Software Mentions 8

bioconductor: chromVAR

Chromatin Variation Across Regions
Papers that mentioned: 46

bioconductor: GSVA

Gene Set Variation Analysis for microarray and RNA-seq data
Papers that mentioned: 893

bioconductor: scDblFinder

scDblFinder
Papers that mentioned: 7

cran: JASPAR

R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
Papers that mentioned: 1,283

cran: Seurat

Tools for Single Cell Genomics
Papers that mentioned: 1,512

cran: Signac

Analysis of Single-Cell Chromatin Data
Papers that mentioned: 24

pypi: CellPhoneDB

Inferring cell-cell communication.
Papers that mentioned: 89

pypi: GSVA

Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
Papers that mentioned: 893