Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.12688/f1000research.12122.1

https://doi.org/10.12688/f1000research.12122.1

Bioconductor workflow for single-cell RNA sequencing: Normalization, dimensionality reduction, clustering, and lineage inference

Cited by: 14
Author(s): Fanny Perraudeau, Davide Risso, Kelly Street, Elizabeth Purdom, Sandrine Dudoit
Published: over 7 years ago

Software Mentions 12

bioconductor: clusterExperiment
Compare Clusterings for Single-Cell Sequencing
Papers that mentioned: 8
bioconductor: scater
Single-Cell Analysis Toolkit for Gene Expression Data in R
Papers that mentioned: 79
bioconductor: scone
Single Cell Overview of Normalized Expression data
Papers that mentioned: 5
bioconductor: SingleCellExperiment
S4 Classes for Single Cell Data
Papers that mentioned: 36
bioconductor: slingshot
Tools for ordering single-cell sequencing
Papers that mentioned: 8
bioconductor: SummarizedExperiment
SummarizedExperiment container
Papers that mentioned: 52
bioconductor: zinbwave
Zero-Inflated Negative Binomial Model for RNA-Seq Data
Papers that mentioned: 12
cran: gam
Generalized Additive Models
Papers that mentioned: 112
cran: rgl
3D Visualization Using OpenGL
Papers that mentioned: 156
pypi: gam
Global Explanations for Deep Neural Networks
Papers that mentioned: 112
pypi: scone
Simple CONfiguration Engine
Papers that mentioned: 5
pypi: slingshot
Index Migration for ElasticSearch
Papers that mentioned: 8