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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Projects: bioconductor: scone

https://packages.ecosyste.ms/registries/bioconductor.org/packages/scone

Single Cell Overview of Normalized Expression data
1 version
Latest release: almost 2 years ago
17,387 downloads total

Enhanced Analysis
Educational Contributors: [email protected] [email protected] [email protected] [email protected] [email protected] [email protected] [email protected]
Repository Activity:
Repository Owner: Yosef Lab (organization)
Department of Systems Immunology, Weizmann Institute of Science Academic
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +140 Educational commit emails
    7 contributors with educational email addresses
  • +20 Academic repository owner
    Repository owned by academic institution
  • +15 Institutional repository owner
    Repository owned by research institution
  • +6 Science terms in README
    3 scientific terms found in README
Very Likely Science (100)

Papers Mentioning scone 5

10.20517/jtgg.2020.51
Toward uncharted territory of cellular heterogeneity: advances and applications of single-cell RNA-seq
Cited by: 2
Author(s): Brandon Lieberman, Meena Kusi, Chia-Nung Hung, Chih-Wei Chou, Ning He, Yen‐Yi Ho, Josephine A. Taverna, Tim Hui-Ming Huang, Chun-Liang Chen
Software Mentions: 18
Published: over 5 years ago
10.12688/f1000research.12122.1
Bioconductor workflow for single-cell RNA sequencing: Normalization, dimensionality reduction, clustering, and lineage inference
Cited by: 14
Author(s): Fanny Perraudeau, Davide Risso, Kelly Street, Elizabeth Purdom, Sandrine Dudoit
Software Mentions: 12
Published: about 8 years ago
10.3390/genes11050532
Sparsity-Penalized Stacked Denoising Autoencoders for Imputing Single-Cell RNA-seq Data
Cited by: 9
Author(s): Weilai Chi, Minghua Deng
Software Mentions: 9
Published: about 5 years ago
10.1186/s12864-018-4772-0
Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics
Cited by: 1,344
Author(s): Kelly Street, Davide Risso, Russell B. Fletcher, Diya Das, John Ngai, Nir Yosef, Elizabeth Purdom, Sandrine Dudoit
Software Mentions: 8
Published: about 7 years ago
10.3389/fgene.2019.00400
NormExpression: An R Package to Normalize Gene Expression Data Using Evaluated Methods
Cited by: 10
Author(s): Zhenfeng Wu, Weixiang Liu, Xiufeng Jin, Haishuo Ji, Hua Wang, Gustavo Glusman, Max Robinson, Lin Liu, Jishou Ruan, Shan Gao
Software Mentions: 7
Published: about 6 years ago