Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12864-018-4772-0

https://doi.org/10.1186/s12864-018-4772-0

Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics

Cited by: 1,344
Author(s): Kelly Street, Davide Risso, Russell B. Fletcher, Diya Das, John Ngai, Nir Yosef, Elizabeth Purdom, Sandrine Dudoit
Published: over 6 years ago

Software Mentions 8

bioconductor: clusterExperiment
Compare Clusterings for Single-Cell Sequencing
Papers that mentioned: 8
bioconductor: scone
Single Cell Overview of Normalized Expression data
Papers that mentioned: 5
bioconductor: splatter
Simple Simulation of Single-cell RNA Sequencing Data
Papers that mentioned: 6
bioconductor: TSCAN
Tools for Single-Cell Analysis
Papers that mentioned: 49
bioconductor: zinbwave
Zero-Inflated Negative Binomial Model for RNA-Seq Data
Papers that mentioned: 12
cran: DDRTree
Learning Principal Graphs with DDRTree
Papers that mentioned: 42
pypi: scone
Simple CONfiguration Engine
Papers that mentioned: 5
pypi: splatter
Vizualizing multidimensional points in a pleasing and informative way
Papers that mentioned: 6