Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: clusterExperiment
https://packages.ecosyste.ms/registries/bioconductor.org/packages/clusterExperiment
Compare Clusterings for Single-Cell Sequencing
1 version
Latest release: 10 months ago
4 dependent packages
47,844 downloads total
Papers Mentioning clusterExperiment 8
10.1371/journal.pcbi.1006361
scPipe: A flexible R/Bioconductor preprocessing pipeline for single-cell RNA-sequencing dataCited by: 92
Author(s): Tian Li, Shian Su, Xueyi Dong, Daniela Amann‐Zalcenstein, Christine Biben, Azadeh Seidi, Douglas J. Hilton, Shalin H. Naik, Matthew E. Ritchie
Software Mentions: 21
Published: almost 6 years ago
10.12688/f1000research.12122.1
Bioconductor workflow for single-cell RNA sequencing: Normalization, dimensionality reduction, clustering, and lineage inferenceCited by: 14
Author(s): Fanny Perraudeau, Davide Risso, Kelly Street, Elizabeth Purdom, Sandrine Dudoit
Software Mentions: 12
Published: about 7 years ago
10.1186/s12864-018-4772-0
Slingshot: cell lineage and pseudotime inference for single-cell transcriptomicsCited by: 1,344
Author(s): Kelly Street, Davide Risso, Russell B. Fletcher, Diya Das, John Ngai, Nir Yosef, Elizabeth Purdom, Sandrine Dudoit
Software Mentions: 8
Published: about 6 years ago
10.1371/journal.pcbi.1006378
clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasetsCited by: 45
Author(s): Davide Risso, Liam Purvis, Russell B. Fletcher, Diya Das, John Ngai, Sandrine Dudoit, Elizabeth Purdom
Software Mentions: 8
Published: almost 6 years ago
10.7554/eLife.43696
Complementary networks of cortical somatostatin interneurons enforce layer specific controlCited by: 82
Author(s): Alexander Naka, Julia Veit, Ben Shababo, Rebecca K. Chance, Davide Risso, David Stafford, Benjamin Snyder, Andrew Egladyous, Desiree Chu, Savitha Sridharan, Daniel P. Mossing, Liam Paninski, John Ngai, Hillel Adesnik
Software Mentions: 7
Published: over 5 years ago
10.12688/f1000research.13511.3
netSmooth: Network-smoothing based imputation for single cell RNA-seqCited by: 53
Author(s): Jonathan Ronen, Altuna Akalin
Software Mentions: 2
Published: about 6 years ago
10.1523/ENEURO.0152-18.2018
Combinatorial Expression of<i>Grp</i>and<i>Neurod6</i>Defines Dopamine Neuron Populations with Distinct Projection Patterns and Disease VulnerabilityCited by: 39
Author(s): Daniel J. Kramer, Davide Risso, Polina Kosillo, John Ngai, Helen S. Bateup
Software Mentions: 2
Published: about 6 years ago
10.1371/journal.pcbi.1006727
Correction: clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasetsCited by: 0
Author(s):
Software Mentions: 1
Published: over 5 years ago