Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pcbi.1006378

https://doi.org/10.1371/journal.pcbi.1006378

clusterExperiment and RSEC: A Bioconductor package and framework for clustering of single-cell and other large gene expression datasets

Cited by: 45
Author(s): Davide Risso, Liam Purvis, Russell B. Fletcher, Diya Das, John Ngai, Sandrine Dudoit, Elizabeth Purdom
Published: over 6 years ago

Software Mentions 8

bioconductor: clusterExperiment
Compare Clusterings for Single-Cell Sequencing
Papers that mentioned: 8
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: MAST
Model-based Analysis of Single Cell Transcriptomics
Papers that mentioned: 668
bioconductor: SingleCellExperiment
S4 Classes for Single Cell Data
Papers that mentioned: 36
cran: NMF
Algorithms and Framework for Nonnegative Matrix Factorization (NMF)
Papers that mentioned: 108
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
pypi: MAST
MAterials Simulation Toolkit
Papers that mentioned: 668