Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: splatter
https://packages.ecosyste.ms/registries/bioconductor.org/packages/splatter
Simple Simulation of Single-cell RNA Sequencing Data
1 version
Latest release: about 1 year ago
5 dependent packages
37,289 downloads total
Papers Mentioning splatter 6
10.12688/f1000research.15666.3
A systematic performance evaluation of clustering methods for single-cell RNA-seq dataCited by: 33
Author(s): Angelo Duò, Mark D. Robinson, Charlotte Soneson
Software Mentions: 17
Published: almost 4 years ago
10.3390/life11070716
Single-Cell Transcriptome Profiling Simulation Reveals the Impact of Sequencing Parameters and Algorithms on ClusteringCited by: 0
Author(s): Yunhe Liu, Aoshen Wu, Xueqing Peng, Xiaona Liu, Gang Liu, Lei Liu
Software Mentions: 15
Published: over 3 years ago
10.1186/s13059-021-02407-x
Optimizing expression quantitative trait locus mapping workflows for single-cell studiesCited by: 30
Author(s): Anna Cuomo, Giordano Alvari, Christina B. Azodi, Davis J. McCarthy, Marc Jan Bonder
Software Mentions: 9
Published: over 3 years ago
10.1093/jmcb/mjaa052
Imputing single-cell RNA-seq data by considering cell heterogeneity and prior expression of dropoutsCited by: 18
Author(s): Lihua Zhang, Shihua Zhang
Software Mentions: 9
Published: about 4 years ago
10.1186/s12864-018-4772-0
Slingshot: cell lineage and pseudotime inference for single-cell transcriptomicsCited by: 1,344
Author(s): Kelly Street, Davide Risso, Russell B. Fletcher, Diya Das, John Ngai, Nir Yosef, Elizabeth Purdom, Sandrine Dudoit
Software Mentions: 8
Published: over 6 years ago
10.1093/bioinformatics/btx631
Towards unified quality verification of synthetic count data with <i>countsimQC</i>Cited by: 39
Author(s): Charlotte Soneson, Mark D. Robinson
Software Mentions: 5
Published: about 7 years ago