Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3390/life11070716

https://doi.org/10.3390/life11070716

Cited by: 0
Author(s): Yunhe Liu, Aoshen Wu, Xueqing Peng, Xiaona Liu, Gang Liu, Lei Liu
Published: almost 3 years ago

Software Mentions 15

bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: scran
Methods for Single-Cell RNA-Seq Data Analysis
Papers that mentioned: 113
bioconductor: splatter
Simple Simulation of Single-cell RNA Sequencing Data
Papers that mentioned: 6
bioconductor: SPsimSeq
Semi-parametric simulation tool for bulk and single-cell RNA sequencing data
Papers that mentioned: 4
cran: densityClust
Clustering by Fast Search and Find of Density Peaks
Papers that mentioned: 6
cran: fastICA
FastICA Algorithms to Perform ICA and Projection Pursuit
Papers that mentioned: 56
cran: phateR
PHATE - Potential of Heat-Diffusion for Affinity-Based Transition Embedding
Papers that mentioned: 4
cran: Rtsne
T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut Implementation
Papers that mentioned: 255
cran: SimSeq
Nonparametric Simulation of RNA-Seq Data
Papers that mentioned: 36
cran: som
Self-Organizing Map
Papers that mentioned: 9
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: som
stanford open modules for python
Papers that mentioned: 9
pypi: splatter
Vizualizing multidimensional points in a pleasing and informative way
Papers that mentioned: 6
pypi: SymSim
Tool for simulating planes of symmetries assuming kinematic diffraction
Papers that mentioned: 7