cran: fastICA | Projects | Ecosyste.ms: Papers

10.3390/life11070716

Single-Cell Transcriptome Profiling Simulation Reveals the Impact of Sequencing Parameters and Algorithms on Clustering
Cited by: 0
Author(s): Yunhe Liu, Aoshen Wu, Xueqing Peng, Xiaona Liu, Gang Liu, Lei Liu
Software Mentions: 15
Published: about 3 years ago

10.1186/s12920-019-0578-4

Deconvolution of transcriptomes and miRNomes by independent component analysis provides insights into biological processes and clinical outcomes of melanoma patients
Cited by: 21
Author(s): Petr V. Nazarov, Anke Wienecke-Baldacchino, Andreï Zinovyev, Urszula Czerwińska, Arnaud Muller, Dorothée Nashan, Gunnar Dittmar, Francisco Azuaje, Stephanie Kreis
Software Mentions: 14
Published: almost 5 years ago

10.1534/g3.120.401270

Application of Transcriptional Gene Modules to Analysis of <i>Caenorhabditis elegans</i>’ Gene Expression Data
Cited by: 7
Author(s): Michael Cary, Katie Podshivalova, Cynthia Kenyon
Software Mentions: 11
Published: almost 4 years ago

10.1371/journal.pone.0089470

Analytic Programming with fMRI Data: A Quick-Start Guide for Statisticians Using R
Cited by: 9
Author(s): Ani Eloyan, Shanshan Li, John Muschelli, James J. Pekar, Stewart H. Mostofsky, Brian Caffo
Software Mentions: 11
Published: over 10 years ago

10.1038/tp.2016.119

Transcriptomic signatures of neuronal differentiation and their association with risk genes for autism spectrum and related neuropsychiatric disorders
Cited by: 23
Author(s): Andreas G. Chiocchetti, Denise Haslinger, Jason L. Stein, Luis de la Torre-Ubieta, Enrico Cocchi, Thomas Rothämel, Silvia Lindlar, Regina Waltes, Simone Fulda, Daniel H. Geschwind, Christine M. Freitag
Software Mentions: 10
Published: about 8 years ago

10.3390/cancers11081057

Mining of Self-Organizing Map Gene-Expression Portraits Reveals Prognostic Stratification of HPV-Positive Head and Neck Squamous Cell Carcinoma
Cited by: 21
Author(s): Laura D. Locati, Mara Serena Serafini, Maria Federica Iannò, Andrea Carenzo, Ester Orlandi, Carlo Resteghin, Stefano Cavalieri, Paolo Bossi, Silvana Canevari, Lisa Licitra, Loris De Cecco
Software Mentions: 9
Published: about 5 years ago

10.1186/s12859-016-0970-4

MetICA: independent component analysis for high-resolution mass-spectrometry based non-targeted metabolomics
Cited by: 22
Author(s): Youzhong Liu, Kirill S. Smirnov, Marianna Lucio, Régis D. Gougeon, Hervé Alexandre, Philippe Schmitt‐Kopplin
Software Mentions: 7
Published: over 8 years ago

10.1371/journal.pone.0180322

Affected pathways and transcriptional regulators in gene expression response to an ultra-marathon trail: Global and independent activity approaches
Cited by: 6
Author(s): María Maqueda, Emma Roca, Daniel Brotons, José Manuel Nieto Soria, Alexandre Perera
Software Mentions: 6
Published: almost 7 years ago

10.1186/s12859-019-3291-6

DeepMF: deciphering the latent patterns in omics profiles with a deep learning method
Cited by: 10
Author(s): Lingxi Chen, Jianjun Xu, Shuai Cheng Li
Software Mentions: 5
Published: almost 5 years ago

10.1186/1471-2105-12-306

Expression cartography of human tissues using self organizing maps
Cited by: 71
Author(s): Henry Wirth, Markus Löffler, Martin von Bergen, Hans Binder
Software Mentions: 5
Published: about 13 years ago

10.1038/s41598-021-83077-4

Distinct temporal features of genuine and deliberate facial expressions of surprise
Cited by: 12
Author(s): Shushi Namba, Hiroshi Matsui, Mircea Zloteanu
Software Mentions: 5
Published: over 3 years ago

10.1016/j.stemcr.2019.08.014

Base-Resolution Methylome of Retinal Pigment Epithelial Cells Used in the First Trial of Human Induced Pluripotent Stem Cell-Based Autologous Transplantation
Cited by: 17
Author(s): Hiromitsu Araki, Fumihito Miura, Akira Watanabe, Chikako Morinaga, Fumiyo Kitaoka, Yuko Kitano, Noriko Sakai, Yu Shibata, Makoto Terada, So Goto, Shinya Yamanaka, Masayo Takahashi, Takashi Ito
Software Mentions: 4
Published: almost 5 years ago

10.7717/peerj.8991

Proteomic analysis and interactions network in leaves of mycorrhizal and nonmycorrhizal sorghum plants under water deficit
Cited by: 9
Author(s): Víctor Olalde‐Portugal, José Luis Cabrera-Ponce, Argel Gastélum-Arellánez, Armando Guerrero‐Rangel, Robert Winkler, Silvia Valdés‐Rodríguez
Software Mentions: 4
Published: over 4 years ago

10.3389/fnins.2016.00015

A Parcellation Based Nonparametric Algorithm for Independent Component Analysis with Application to fMRI Data
Cited by: 3
Author(s): Shanshan Li, Shaojie Chen, Yue Chen, Brian Caffo
Software Mentions: 4
Published: over 8 years ago

10.3390/ijms20184414

Independent Component Analysis for Unraveling the Complexity of Cancer Omics Datasets
Cited by: 59
Author(s): Nicolas Sompairac, Petr V. Nazarov, Urszula Czerwińska, Laura Cantini, Anne Biton, Askhat Molkenov, Zhaxybay Zhumadilov, Emmanuel Barillot, François Radvanyi, Alexander N. Gorban, Ulykbek Kairov, Andreï Zinovyev
Software Mentions: 4
Published: about 5 years ago

10.18632/oncotarget.8412

miR-509-3p is clinically significant and strongly attenuates cellular migration and multi-cellular spheroids in ovarian cancer
Cited by: 49
Author(s): Yinghong Pan, Gordon Robertson, Lykke Pedersen, Emilia L. Lim, Anadulce Hernández-Herrera, Amy C. Rowat, Sagar L. Patil, CY Chan, Yunfei Wen, Xinna Zhang, Upal Basu-Roy, Alka Mansukhani, Andy Chu, Payal Sipahimalani, Reanne Bowlby, Denise Brooks, Nina Thiessen, Cristian Coarfa, Yussanne Ma, Richard A. Moore, Jacquie Schein, Andrew J. Mungall, Jinsong Liu, Chad V. Pecot, Anil K. Sood, Steven J.M. Jones, Marco A. Marra, Preethi H. Gunaratne
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-020-73116-x

Base-resolution methylomes of gliomas bearing histone H3.3 mutations reveal a G34 mutant-specific signature shared with bone tumors
Cited by: 10
Author(s): Yuhei Sangatsuda, Fumihito Miura, Hiromitsu Araki, Masahiro Mizoguchi, Nobuhiro Hata, Daisuke Kuga, Ryusuke Hatae, Yojiro Akagi, Takeo Amemiya, Yutaka Fujioka, Yasuhito Arai, Akihiko Yoshida, Tatsuhiro Shibata, Koji Yoshimoto, Koji Iihara, Takashi Ito
Software Mentions: 4
Published: almost 4 years ago

10.15252/msb.20209946

The transcriptome dynamics of single cells during the cell cycle
Cited by: 28
Author(s): Daniel Schwabe, Sara Formichetti, Jan Philipp Junker, Martin Falcke, Nikolaus Rajewsky
Software Mentions: 4
Published: almost 4 years ago

10.1523/ENEURO.0222-17.2018

Identification of Two Distinct Working Memory-Related Brain Networks in Healthy Young Adults
Cited by: 15
Author(s): Tobias Egli, David Coynel, Klara Spalek, Matthias Fastenrath, Virginie Freytag, Angela Heck, Eva Loos, Bianca Auschra, Andreas Papassotiropoulos, Dominique J.-F. de Quervain, Annette Milnik
Software Mentions: 3
Published: over 6 years ago

10.1128/mSystems.00025-15

ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa Gene Expression Data with Denoising Autoencoders Illuminates Microbe-Host Interactions
Cited by: 111
Author(s): Jie Tan, John H. Hammond, Deborah A. Hogan, Casey S. Greene
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0173496

Parallel group independent component analysis for massive fMRI data sets
Cited by: 6
Author(s): Shaojie Chen, Lei Huang, Huitong Qiu, Mary Beth Nebel, Stewart H. Mostofsky, James J. Pekar, Martin A. Lindquist, Ani Eloyan, Brian Caffo
Software Mentions: 3
Published: over 7 years ago

10.7554/eLife.58591

Transcriptional profiling of mouse peripheral nerves to the single-cell level to build a sciatic nerve ATlas (SNAT)
Cited by: 74
Author(s): Daniel Gerber, Jorge A. Pereira, Joanne Gerber, Ge Tan, Slavica Dimitrieva, Emilio Yángüez, Ueli Suter
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pgen.1006581

Differences in the rare variant spectrum among human populations
Cited by: 90
Author(s): Iain Mathieson, David Reich
Software Mentions: 3
Published: over 7 years ago

10.3390/ijms21041395

Integrative Analysis of Circulating Metabolite Profiles and Magnetic Resonance Imaging Metrics in Patients with Traumatic Brain Injury
Cited by: 11
Author(s): Ilias Thomas, Alex M. Dickens, Jussi P. Posti, Mehrbod Mohammadian, Christian Ledig, Riikka Takala, Tuulia Hyötyläinen, Olli Tenovuo, Matej Orešič
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pcbi.1009358

Envelope reconstruction of speech and music highlights stronger tracking of speech at low frequencies
Cited by: 22
Author(s): Nathaniel J. Zuk, Jeremy W. Murphy, Richard B. Reilly, Edmund C. Lalor
Software Mentions: 2
Published: almost 3 years ago

10.1155/2011/129365

EEGIFT: Group Independent Component Analysis for Event-Related EEG Data
Cited by: 82
Author(s): Tom Eichele, Srinivas Rachakonda, Brage Brakedal, Rune Eikeland, Vince D. Calhoun
Software Mentions: 2
Published: over 13 years ago

10.3390/e20070498

Assessing Information Transmission in Data Transformations with the Channel Multivariate Entropy Triangle
Cited by: 3
Author(s): Francisco J. Valverde-Albacete, Carmen Peláez-Moreno
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-020-68687-8

Weak rTMS-induced electric fields produce neural entrainment in humans
Cited by: 33
Author(s): E. Zmeykina, Matthias Mittner, Walter Paulus, Zsolt Turi
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0181195

Independent Component Analysis (ICA) based-clustering of temporal RNA-seq data
Cited by: 23
Author(s): Moysés Nascimento, Fabyano Fonseca e Silva, Thelma Sáfadi, Ana Carolina Campana Nascimento, Talles Eduardo Maciel Ferreira, Laís Mayara Azevedo Barroso, Camila Ferreira Azevedo, Simone Eliza Faccione Guimarães, Nick V. L. Serão
Software Mentions: 2
Published: about 7 years ago

10.3389/fnhum.2013.00019

ICA analysis of fMRI with real-time constraints: an evaluation of fast detection performance as function of algorithms, parameters and a priori conditions
Cited by: 13
Author(s): Nicola Soldati, Vince D. Calhoun, Lorenzo Bruzzone, Jorge Jovicich
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0050888

Graphical Modeling of Gene Expression in Monocytes Suggests Molecular Mechanisms Explaining Increased Atherosclerosis in Smokers
Cited by: 34
Author(s): Ricardo A. Verdugo, Tanja Zeller, Maxime Rotival, Philipp S. Wild, Thomas Münzel, Karl J. Lackner, Henri Weidmann, Ewa Ninio, David‐Alexandre Trégouët, François Cambien, Stefan Blankenberg, Laurence Tiret
Software Mentions: 2
Published: over 11 years ago

10.3389/fninf.2018.00055

Decentralized Analysis of Brain Imaging Data: Voxel-Based Morphometry and Dynamic Functional Network Connectivity
Cited by: 15
Author(s): Harshvardhan Gazula, Bradley T. Baker, Eswar Damaraju, Sergey M. Plis, Sandeep R. Panta, Rogers F. Silva, Vince D. Calhoun
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0174462

Auditory steady state responses and cochlear implants: Modeling the artifact-response mixture in the perspective of denoising
Cited by: 4
Author(s): Faten Mina, Virginie Attina, Yvan Duroc, E. Veuillet, Éric Truy, Hung Thai-Van
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pcbi.0030161

Elucidating the Altered Transcriptional Programs in Breast Cancer using Independent Component Analysis
Cited by: 120
Author(s): Andrew E. Teschendorff, Michel Journée, Pierre-Antoine Absil, Rodolphe Sepulchre, Carlos Caldas
Software Mentions: 1
Published: about 17 years ago

10.1155/2012/824024

Protein Markers for the Differential Diagnosis of Vascular Dementia and Alzheimer’s Disease
Cited by: 10
Author(s): Anja Hviid Simonsen, N.-O. Hagnelius, Gunhild Waldemar, Torbjörn Nilsson, J. H. McGuire
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pcbi.1007055

Spatial neuronal synchronization and the waveform of oscillations: Implications for EEG and MEG
Cited by: 42
Author(s): Natalie Schaworonkow, Vadim V. Nikulin
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0167187

The Central Role of KNG1 Gene as a Genetic Determinant of Coagulation Pathway-Related Traits: Exploring Metaphenotypes
Cited by: 8
Author(s): Héléna Brunel, Raimon Massanet, Ángel Martinez-Perez, Andrey Ziyatdinov, Laura Martín-Fernández, Juan Carlos Souto, Alexandre Perera, José Manuel Nieto Soria
Software Mentions: 1
Published: over 7 years ago

10.3390/brainsci10040223

Mesocorticolimbic Interactions Mediate fMRI-Guided Regulation of Self-Generated Affective States
Cited by: 3
Author(s): Andrea Caria
Software Mentions: 1
Published: over 4 years ago

10.1093/cercor/bhu271

The Neural Dynamics of Fronto-Parietal Networks in Childhood Revealed using Magnetoencephalography
Cited by: 23
Author(s): Duncan E. Astle, Henry Luckhoo, Mark W. Woolrich, Bo-Cheng Kuo, Anna C. Nobre, Gaia Scerif
Software Mentions: 1
Published: almost 10 years ago

10.1111/desc.12297

Electrophysiological measures of resting state functional connectivity and their relationship with working memory capacity in childhood
Cited by: 26
Author(s): J. J. Barnes, Mark W. Woolrich, Kate Baker, Giles L. Colclough, Duncan E. Astle
Software Mentions: 1
Published: over 9 years ago

10.3389/fncom.2013.00185

Model selection for the extraction of movement primitives
Cited by: 18
Author(s): Dominik Endres, Enrico Chiovetto, Martin A. Giese
Software Mentions: 1
Published: over 11 years ago

10.3389/fnhum.2013.00168

Beyond Noise: Using Temporal ICA to Extract Meaningful Information from High-Frequency fMRI Signal Fluctuations during Rest
Cited by: 124
Author(s): Roland N. Boubela, Klaudius Kalcher, Wolfgang Huf, Claudia Kronnerwetter, Peter Filzmoser, Ewald Moser
Software Mentions: 1
Published: over 11 years ago

10.3389/fnhum.2012.00301

Fully exploratory network independent component analysis of the 1000 functional connectomes database
Cited by: 52
Author(s): Klaudius Kalcher, Wolfgang Huf, Roland N. Boubela, Peter Filzmoser, Lukas Pezawas, Bharat B. Biswal, Siegfried Kasper, Ewald Moser, Christian Windischberger
Software Mentions: 1
Published: over 12 years ago

10.3389/fnbot.2019.00024

Functional Source Separation for EEG-fMRI Fusion: Application to Steady-State Visual Evoked Potentials
Cited by: 11
Author(s): Hong Ji, Badong Chen, Nathan M. Petro, Zejian Yuan, Nanning Zheng, Andreas Keil
Software Mentions: 1
Published: over 5 years ago

10.3389/fnins.2018.00992

Electrophysiology Meets Printed Electronics: The Beginning of a Beautiful Friendship
Cited by: 13
Author(s): Lilah Inzelberg, Yael Hanein
Software Mentions: 1
Published: over 5 years ago

10.3389/fphys.2021.624317

Coordinated Reset Vibrotactile Stimulation Induces Sustained Cumulative Benefits in Parkinson’s Disease
Cited by: 19
Author(s): Kristina J. Pfeifer, Justus A. Kromer, Alexander J. Cook, Traci Hornbeck, Erika A. Lim, Bruce J. P. Mortimer, Adam Fogarty, Summer S. Han, Rohit Dhall, Casey H. Halpern, Peter A. Tass
Software Mentions: 1
Published: over 3 years ago

10.1186/s12864-017-4112-9

Determining the optimal number of independent components for reproducible transcriptomic data analysis
Cited by: 49
Author(s): Ulykbek Kairov, Laura Cantini, Alessandro Greco, Askhat Molkenov, Urszula Czerwińska, Emmanuel Barillot, Andreï Zinovyev
Software Mentions: 1
Published: about 7 years ago

10.1534/genetics.120.303153

Private Genomes and Public SNPs: Homomorphic Encryption of Genotypes and Phenotypes for Shared Quantitative Genetics
Cited by: 5
Author(s): Richard Mott, Christian Fischer, Pjotr Prins, R. W. Davies
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-018-20567-y

A Wearable High-Resolution Facial Electromyography for Long Term Recordings in Freely Behaving Humans
Cited by: 35
Author(s): Lilah Inzelberg, David G. Rand, Stanislav Steinberg, Moshe David‐Pur, Yael Hanein
Software Mentions: 1
Published: over 6 years ago

10.3390/s17122725

Adaptive Spatial Filter Based on Similarity Indices to Preserve the Neural Information on EEG Signals during On-Line Processing
Cited by: 23
Author(s): Denis Delisle-Rodríguez, Ana Cecilia Villa-Parra, Teodiano Bastos, Alberto López Delis, Anselmo Frizera, Sridhar Krishnan, Eduardo Rocón
Software Mentions: 1
Published: almost 7 years ago

10.3390/s18051466

Multiband Envelope Spectra Extraction for Fault Diagnosis of Rolling Element Bearings
Cited by: 22
Author(s): Jie Duan, Tielin Shi, Hongdi Zhou, Jianhua Xuan, Yongxiang Zhang
Software Mentions: 1
Published: over 6 years ago

10.3390/s19194137

A Computational Framework for Data Fusion in MEMS-Based Cardiac and Respiratory Gating
Cited by: 6
Author(s): Mojtaba Jafari Tadi, Eero Lehtonen, Jarmo Teuho, Juho Koskinen, Jussi Schultz, Reetta Siekkinen, Tero Koivisto, Mikko Pänkäälä, Mika Teräs, Рику Клен
Software Mentions: 1
Published: almost 5 years ago

10.3390/s19204541

A New Approach for Motor Imagery Classification Based on Sorted Blind Source Separation, Continuous Wavelet Transform, and Convolutional Neural Network
Cited by: 52
Author(s): César Javier Ortiz-Echeverri, Sebastián Salazar-Colores, Juvenal Rodríguez‐Reséndiz, Roberto A. Gómez‐Loenzo
Software Mentions: 1
Published: almost 5 years ago

10.3390/s21134298

Dedicated Algorithm for Unobtrusive Fetal Heart Rate Monitoring Using Multiple Dry Electrodes
Cited by: 7
Author(s): Alessandra Galli, Elisabetta Peri, Yijing Zhang, Rik Vullings, Myrthe van der Ven, Giada Giorgi, Sotir Ouzounov, Pieter Harpe, Massimo Mischi
Software Mentions: 1
Published: about 3 years ago

10.1093/scan/nsaa067

Default network interactivity during mentalizing about known others is modulated by age and social closeness
Cited by: 8
Author(s): Anne C Laurita, Elizabeth DuPré, Natalie C. Ebner, Gary R. Turner, R. Nathan Spreng
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2164-7-90

Differential expression of selected histone modifier genes in human solid cancers
Cited by: 227
Author(s): Hilal Özdağ, Andrew E. Teschendorff, Ahmed A. Ahmed, Sarah J Hyland, Cherie Blenkiron, Linda Bobrow, Abhi Veerakumarasivam, Glynn Burtt, Tanya Subkhankulova, Mark J. Arends, V. Peter Collins, David D.L. Bowtell, Tony Kouzarides, James D. Brenton, Carlos Caldas
Software Mentions: 1
Published: over 18 years ago

Projects: cran: fastICA

Papers Mentioning fastICA 56