Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: fastICA
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/fastICA
FastICA Algorithms to Perform ICA and Projection Pursuit
21 versions
Latest release: over 3 years ago
27 dependent packages
14,522 downloads last month
Papers Mentioning fastICA 56
10.3390/life11070716
Single-Cell Transcriptome Profiling Simulation Reveals the Impact of Sequencing Parameters and Algorithms on ClusteringCited by: 0
Author(s): Yunhe Liu, Aoshen Wu, Xueqing Peng, Xiaona Liu, Gang Liu, Lei Liu
Software Mentions: 15
Published: over 3 years ago
10.1186/s12920-019-0578-4
Deconvolution of transcriptomes and miRNomes by independent component analysis provides insights into biological processes and clinical outcomes of melanoma patientsCited by: 21
Author(s): Petr V. Nazarov, Anke Wienecke-Baldacchino, Andreï Zinovyev, Urszula Czerwińska, Arnaud Muller, Dorothée Nashan, Gunnar Dittmar, Francisco Azuaje, Stephanie Kreis
Software Mentions: 14
Published: over 5 years ago
10.1534/g3.120.401270
Application of Transcriptional Gene Modules to Analysis of <i>Caenorhabditis elegans</i>’ Gene Expression DataCited by: 7
Author(s): Michael Cary, Katie Podshivalova, Cynthia Kenyon
Software Mentions: 11
Published: about 4 years ago
10.1371/journal.pone.0089470
Analytic Programming with fMRI Data: A Quick-Start Guide for Statisticians Using RCited by: 9
Author(s): Ani Eloyan, Shanshan Li, John Muschelli, James J. Pekar, Stewart H. Mostofsky, Brian Caffo
Software Mentions: 11
Published: almost 11 years ago
10.1038/tp.2016.119
Transcriptomic signatures of neuronal differentiation and their association with risk genes for autism spectrum and related neuropsychiatric disordersCited by: 23
Author(s): Andreas G. Chiocchetti, Denise Haslinger, Jason L. Stein, Luis de la Torre-Ubieta, Enrico Cocchi, Thomas Rothämel, Silvia Lindlar, Regina Waltes, Simone Fulda, Daniel H. Geschwind, Christine M. Freitag
Software Mentions: 10
Published: over 8 years ago
10.3390/cancers11081057
Mining of Self-Organizing Map Gene-Expression Portraits Reveals Prognostic Stratification of HPV-Positive Head and Neck Squamous Cell CarcinomaCited by: 21
Author(s): Laura D. Locati, Mara Serena Serafini, Maria Federica Iannò, Andrea Carenzo, Ester Orlandi, Carlo Resteghin, Stefano Cavalieri, Paolo Bossi, Silvana Canevari, Lisa Licitra, Loris De Cecco
Software Mentions: 9
Published: over 5 years ago
10.1186/s12859-016-0970-4
MetICA: independent component analysis for high-resolution mass-spectrometry based non-targeted metabolomicsCited by: 22
Author(s): Youzhong Liu, Kirill S. Smirnov, Marianna Lucio, Régis D. Gougeon, Hervé Alexandre, Philippe Schmitt‐Kopplin
Software Mentions: 7
Published: almost 9 years ago
10.1371/journal.pone.0180322
Affected pathways and transcriptional regulators in gene expression response to an ultra-marathon trail: Global and independent activity approachesCited by: 6
Author(s): María Maqueda, Emma Roca, Daniel Brotons, José Manuel Nieto Soria, Alexandre Perera
Software Mentions: 6
Published: about 7 years ago
10.1186/s12859-019-3291-6
DeepMF: deciphering the latent patterns in omics profiles with a deep learning methodCited by: 10
Author(s): Lingxi Chen, Jianjun Xu, Shuai Cheng Li
Software Mentions: 5
Published: about 5 years ago
10.1186/1471-2105-12-306
Expression cartography of human tissues using self organizing mapsCited by: 71
Author(s): Henry Wirth, Markus Löffler, Martin von Bergen, Hans Binder
Software Mentions: 5
Published: over 13 years ago
10.1038/s41598-021-83077-4
Distinct temporal features of genuine and deliberate facial expressions of surpriseCited by: 12
Author(s): Shushi Namba, Hiroshi Matsui, Mircea Zloteanu
Software Mentions: 5
Published: almost 4 years ago
10.1016/j.stemcr.2019.08.014
Base-Resolution Methylome of Retinal Pigment Epithelial Cells Used in the First Trial of Human Induced Pluripotent Stem Cell-Based Autologous TransplantationCited by: 17
Author(s): Hiromitsu Araki, Fumihito Miura, Akira Watanabe, Chikako Morinaga, Fumiyo Kitaoka, Yuko Kitano, Noriko Sakai, Yu Shibata, Makoto Terada, So Goto, Shinya Yamanaka, Masayo Takahashi, Takashi Ito
Software Mentions: 4
Published: about 5 years ago
10.7717/peerj.8991
Proteomic analysis and interactions network in leaves of mycorrhizal and nonmycorrhizal sorghum plants under water deficitCited by: 9
Author(s): Víctor Olalde‐Portugal, José Luis Cabrera-Ponce, Argel Gastélum-Arellánez, Armando Guerrero‐Rangel, Robert Winkler, Silvia Valdés‐Rodríguez
Software Mentions: 4
Published: over 4 years ago
10.3389/fnins.2016.00015
A Parcellation Based Nonparametric Algorithm for Independent Component Analysis with Application to fMRI DataCited by: 3
Author(s): Shanshan Li, Shaojie Chen, Yue Chen, Brian Caffo
Software Mentions: 4
Published: almost 9 years ago
10.3390/ijms20184414
Independent Component Analysis for Unraveling the Complexity of Cancer Omics DatasetsCited by: 59
Author(s): Nicolas Sompairac, Petr V. Nazarov, Urszula Czerwińska, Laura Cantini, Anne Biton, Askhat Molkenov, Zhaxybay Zhumadilov, Emmanuel Barillot, François Radvanyi, Alexander N. Gorban, Ulykbek Kairov, Andreï Zinovyev
Software Mentions: 4
Published: over 5 years ago
10.18632/oncotarget.8412
miR-509-3p is clinically significant and strongly attenuates cellular migration and multi-cellular spheroids in ovarian cancerCited by: 49
Author(s): Yinghong Pan, Gordon Robertson, Lykke Pedersen, Emilia L. Lim, Anadulce Hernández-Herrera, Amy C. Rowat, Sagar L. Patil, CY Chan, Yunfei Wen, Xinna Zhang, Upal Basu-Roy, Alka Mansukhani, Andy Chu, Payal Sipahimalani, Reanne Bowlby, Denise Brooks, Nina Thiessen, Cristian Coarfa, Yussanne Ma, Richard A. Moore, Jacquie Schein, Andrew J. Mungall, Jinsong Liu, Chad V. Pecot, Anil K. Sood, Steven J.M. Jones, Marco A. Marra, Preethi H. Gunaratne
Software Mentions: 4
Published: almost 9 years ago
10.1038/s41598-020-73116-x
Base-resolution methylomes of gliomas bearing histone H3.3 mutations reveal a G34 mutant-specific signature shared with bone tumorsCited by: 10
Author(s): Yuhei Sangatsuda, Fumihito Miura, Hiromitsu Araki, Masahiro Mizoguchi, Nobuhiro Hata, Daisuke Kuga, Ryusuke Hatae, Yojiro Akagi, Takeo Amemiya, Yutaka Fujioka, Yasuhito Arai, Akihiko Yoshida, Tatsuhiro Shibata, Koji Yoshimoto, Koji Iihara, Takashi Ito
Software Mentions: 4
Published: about 4 years ago
10.15252/msb.20209946
The transcriptome dynamics of single cells during the cell cycleCited by: 28
Author(s): Daniel Schwabe, Sara Formichetti, Jan Philipp Junker, Martin Falcke, Nikolaus Rajewsky
Software Mentions: 4
Published: about 4 years ago
10.1523/ENEURO.0222-17.2018
Identification of Two Distinct Working Memory-Related Brain Networks in Healthy Young AdultsCited by: 15
Author(s): Tobias Egli, David Coynel, Klara Spalek, Matthias Fastenrath, Virginie Freytag, Angela Heck, Eva Loos, Bianca Auschra, Andreas Papassotiropoulos, Dominique J.-F. de Quervain, Annette Milnik
Software Mentions: 3
Published: almost 7 years ago
10.1128/mSystems.00025-15
ADAGE-Based Integration of Publicly Available Pseudomonas aeruginosa Gene Expression Data with Denoising Autoencoders Illuminates Microbe-Host InteractionsCited by: 111
Author(s): Jie Tan, John H. Hammond, Deborah A. Hogan, Casey S. Greene
Software Mentions: 3
Published: almost 9 years ago
10.1371/journal.pone.0173496
Parallel group independent component analysis for massive fMRI data setsCited by: 6
Author(s): Shaojie Chen, Lei Huang, Huitong Qiu, Mary Beth Nebel, Stewart H. Mostofsky, James J. Pekar, Martin A. Lindquist, Ani Eloyan, Brian Caffo
Software Mentions: 3
Published: almost 8 years ago
10.7554/eLife.58591
Transcriptional profiling of mouse peripheral nerves to the single-cell level to build a sciatic nerve ATlas (SNAT)Cited by: 74
Author(s): Daniel Gerber, Jorge A. Pereira, Joanne Gerber, Ge Tan, Slavica Dimitrieva, Emilio Yángüez, Ueli Suter
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pgen.1006581
Differences in the rare variant spectrum among human populationsCited by: 90
Author(s): Iain Mathieson, David Reich
Software Mentions: 3
Published: almost 8 years ago
10.3390/ijms21041395
Integrative Analysis of Circulating Metabolite Profiles and Magnetic Resonance Imaging Metrics in Patients with Traumatic Brain InjuryCited by: 11
Author(s): Ilias Thomas, Alex M. Dickens, Jussi P. Posti, Mehrbod Mohammadian, Christian Ledig, Riikka Takala, Tuulia Hyötyläinen, Olli Tenovuo, Matej Orešič
Software Mentions: 3
Published: almost 5 years ago
10.1371/journal.pcbi.1009358
Envelope reconstruction of speech and music highlights stronger tracking of speech at low frequenciesCited by: 22
Author(s): Nathaniel J. Zuk, Jeremy W. Murphy, Richard B. Reilly, Edmund C. Lalor
Software Mentions: 2
Published: over 3 years ago
10.1155/2011/129365
EEGIFT: Group Independent Component Analysis for Event-Related EEG DataCited by: 82
Author(s): Tom Eichele, Srinivas Rachakonda, Brage Brakedal, Rune Eikeland, Vince D. Calhoun
Software Mentions: 2
Published: almost 14 years ago
10.3390/e20070498
Assessing Information Transmission in Data Transformations with the Channel Multivariate Entropy TriangleCited by: 3
Author(s): Francisco J. Valverde-Albacete, Carmen Peláez-Moreno
Software Mentions: 2
Published: over 6 years ago
10.1038/s41598-020-68687-8
Weak rTMS-induced electric fields produce neural entrainment in humansCited by: 33
Author(s): E. Zmeykina, Matthias Mittner, Walter Paulus, Zsolt Turi
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0181195
Independent Component Analysis (ICA) based-clustering of temporal RNA-seq dataCited by: 23
Author(s): Moysés Nascimento, Fabyano Fonseca e Silva, Thelma Sáfadi, Ana Carolina Campana Nascimento, Talles Eduardo Maciel Ferreira, Laís Mayara Azevedo Barroso, Camila Ferreira Azevedo, Simone Eliza Faccione Guimarães, Nick V. L. Serão
Software Mentions: 2
Published: over 7 years ago
10.3389/fnhum.2013.00019
ICA analysis of fMRI with real-time constraints: an evaluation of fast detection performance as function of algorithms, parameters and a priori conditionsCited by: 13
Author(s): Nicola Soldati, Vince D. Calhoun, Lorenzo Bruzzone, Jorge Jovicich
Software Mentions: 2
Published: almost 12 years ago
10.1371/journal.pone.0050888
Graphical Modeling of Gene Expression in Monocytes Suggests Molecular Mechanisms Explaining Increased Atherosclerosis in SmokersCited by: 34
Author(s): Ricardo A. Verdugo, Tanja Zeller, Maxime Rotival, Philipp S. Wild, Thomas Münzel, Karl J. Lackner, Henri Weidmann, Ewa Ninio, David‐Alexandre Trégouët, François Cambien, Stefan Blankenberg, Laurence Tiret
Software Mentions: 2
Published: almost 12 years ago
10.3389/fninf.2018.00055
Decentralized Analysis of Brain Imaging Data: Voxel-Based Morphometry and Dynamic Functional Network ConnectivityCited by: 15
Author(s): Harshvardhan Gazula, Bradley T. Baker, Eswar Damaraju, Sergey M. Plis, Sandeep R. Panta, Rogers F. Silva, Vince D. Calhoun
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0174462
Auditory steady state responses and cochlear implants: Modeling the artifact-response mixture in the perspective of denoisingCited by: 4
Author(s): Faten Mina, Virginie Attina, Yvan Duroc, E. Veuillet, Éric Truy, Hung Thai-Van
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pcbi.0030161
Elucidating the Altered Transcriptional Programs in Breast Cancer using Independent Component AnalysisCited by: 120
Author(s): Andrew E. Teschendorff, Michel Journée, Pierre-Antoine Absil, Rodolphe Sepulchre, Carlos Caldas
Software Mentions: 1
Published: over 17 years ago
10.1155/2012/824024
Protein Markers for the Differential Diagnosis of Vascular Dementia and Alzheimer’s DiseaseCited by: 10
Author(s): Anja Hviid Simonsen, N.-O. Hagnelius, Gunhild Waldemar, Torbjörn Nilsson, J. H. McGuire
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pcbi.1007055
Spatial neuronal synchronization and the waveform of oscillations: Implications for EEG and MEGCited by: 42
Author(s): Natalie Schaworonkow, Vadim V. Nikulin
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0167187
The Central Role of KNG1 Gene as a Genetic Determinant of Coagulation Pathway-Related Traits: Exploring MetaphenotypesCited by: 8
Author(s): Héléna Brunel, Raimon Massanet, Ángel Martinez-Perez, Andrey Ziyatdinov, Laura Martín-Fernández, Juan Carlos Souto, Alexandre Perera, José Manuel Nieto Soria
Software Mentions: 1
Published: about 8 years ago
10.3390/brainsci10040223
Mesocorticolimbic Interactions Mediate fMRI-Guided Regulation of Self-Generated Affective StatesCited by: 3
Author(s): Andrea Caria
Software Mentions: 1
Published: over 4 years ago
10.1093/cercor/bhu271
The Neural Dynamics of Fronto-Parietal Networks in Childhood Revealed using MagnetoencephalographyCited by: 23
Author(s): Duncan E. Astle, Henry Luckhoo, Mark W. Woolrich, Bo-Cheng Kuo, Anna C. Nobre, Gaia Scerif
Software Mentions: 1
Published: about 10 years ago
10.1111/desc.12297
Electrophysiological measures of resting state functional connectivity and their relationship with working memory capacity in childhoodCited by: 26
Author(s): J. J. Barnes, Mark W. Woolrich, Kate Baker, Giles L. Colclough, Duncan E. Astle
Software Mentions: 1
Published: almost 10 years ago
10.3389/fncom.2013.00185
Model selection for the extraction of movement primitivesCited by: 18
Author(s): Dominik Endres, Enrico Chiovetto, Martin A. Giese
Software Mentions: 1
Published: almost 12 years ago
10.3389/fnhum.2013.00168
Beyond Noise: Using Temporal ICA to Extract Meaningful Information from High-Frequency fMRI Signal Fluctuations during RestCited by: 124
Author(s): Roland N. Boubela, Klaudius Kalcher, Wolfgang Huf, Claudia Kronnerwetter, Peter Filzmoser, Ewald Moser
Software Mentions: 1
Published: almost 12 years ago
10.3389/fnhum.2012.00301
Fully exploratory network independent component analysis of the 1000 functional connectomes databaseCited by: 52
Author(s): Klaudius Kalcher, Wolfgang Huf, Roland N. Boubela, Peter Filzmoser, Lukas Pezawas, Bharat B. Biswal, Siegfried Kasper, Ewald Moser, Christian Windischberger
Software Mentions: 1
Published: almost 13 years ago
10.3389/fnbot.2019.00024
Functional Source Separation for EEG-fMRI Fusion: Application to Steady-State Visual Evoked PotentialsCited by: 11
Author(s): Hong Ji, Badong Chen, Nathan M. Petro, Zejian Yuan, Nanning Zheng, Andreas Keil
Software Mentions: 1
Published: over 5 years ago
10.3389/fnins.2018.00992
Electrophysiology Meets Printed Electronics: The Beginning of a Beautiful FriendshipCited by: 13
Author(s): Lilah Inzelberg, Yael Hanein
Software Mentions: 1
Published: almost 6 years ago
10.3389/fphys.2021.624317
Coordinated Reset Vibrotactile Stimulation Induces Sustained Cumulative Benefits in Parkinson’s DiseaseCited by: 19
Author(s): Kristina J. Pfeifer, Justus A. Kromer, Alexander J. Cook, Traci Hornbeck, Erika A. Lim, Bruce J. P. Mortimer, Adam Fogarty, Summer S. Han, Rohit Dhall, Casey H. Halpern, Peter A. Tass
Software Mentions: 1
Published: over 3 years ago
10.1186/s12864-017-4112-9
Determining the optimal number of independent components for reproducible transcriptomic data analysisCited by: 49
Author(s): Ulykbek Kairov, Laura Cantini, Alessandro Greco, Askhat Molkenov, Urszula Czerwińska, Emmanuel Barillot, Andreï Zinovyev
Software Mentions: 1
Published: over 7 years ago
10.1534/genetics.120.303153
Private Genomes and Public SNPs: Homomorphic Encryption of Genotypes and Phenotypes for Shared Quantitative GeneticsCited by: 5
Author(s): Richard Mott, Christian Fischer, Pjotr Prins, R. W. Davies
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-018-20567-y
A Wearable High-Resolution Facial Electromyography for Long Term Recordings in Freely Behaving HumansCited by: 35
Author(s): Lilah Inzelberg, David G. Rand, Stanislav Steinberg, Moshe David‐Pur, Yael Hanein
Software Mentions: 1
Published: almost 7 years ago
10.3390/s17122725
Adaptive Spatial Filter Based on Similarity Indices to Preserve the Neural Information on EEG Signals during On-Line ProcessingCited by: 23
Author(s): Denis Delisle-Rodríguez, Ana Cecilia Villa-Parra, Teodiano Bastos, Alberto López Delis, Anselmo Frizera, Sridhar Krishnan, Eduardo Rocón
Software Mentions: 1
Published: about 7 years ago
10.3390/s18051466
Multiband Envelope Spectra Extraction for Fault Diagnosis of Rolling Element BearingsCited by: 22
Author(s): Jie Duan, Tielin Shi, Hongdi Zhou, Jianhua Xuan, Yongxiang Zhang
Software Mentions: 1
Published: over 6 years ago
10.3390/s19194137
A Computational Framework for Data Fusion in MEMS-Based Cardiac and Respiratory GatingCited by: 6
Author(s): Mojtaba Jafari Tadi, Eero Lehtonen, Jarmo Teuho, Juho Koskinen, Jussi Schultz, Reetta Siekkinen, Tero Koivisto, Mikko Pänkäälä, Mika Teräs, Рику Клен
Software Mentions: 1
Published: over 5 years ago
10.3390/s19204541
A New Approach for Motor Imagery Classification Based on Sorted Blind Source Separation, Continuous Wavelet Transform, and Convolutional Neural NetworkCited by: 52
Author(s): César Javier Ortiz-Echeverri, Sebastián Salazar-Colores, Juvenal Rodríguez‐Reséndiz, Roberto A. Gómez‐Loenzo
Software Mentions: 1
Published: about 5 years ago
10.3390/s21134298
Dedicated Algorithm for Unobtrusive Fetal Heart Rate Monitoring Using Multiple Dry ElectrodesCited by: 7
Author(s): Alessandra Galli, Elisabetta Peri, Yijing Zhang, Rik Vullings, Myrthe van der Ven, Giada Giorgi, Sotir Ouzounov, Pieter Harpe, Massimo Mischi
Software Mentions: 1
Published: over 3 years ago
10.1093/scan/nsaa067
Default network interactivity during mentalizing about known others is modulated by age and social closenessCited by: 8
Author(s): Anne C Laurita, Elizabeth DuPré, Natalie C. Ebner, Gary R. Turner, R. Nathan Spreng
Software Mentions: 1
Published: over 4 years ago
10.1186/1471-2164-7-90
Differential expression of selected histone modifier genes in human solid cancersCited by: 227
Author(s): Hilal Özdağ, Andrew E. Teschendorff, Ahmed A. Ahmed, Sarah J Hyland, Cherie Blenkiron, Linda Bobrow, Abhi Veerakumarasivam, Glynn Burtt, Tanya Subkhankulova, Mark J. Arends, V. Peter Collins, David D.L. Bowtell, Tony Kouzarides, James D. Brenton, Carlos Caldas
Software Mentions: 1
Published: over 18 years ago