Projects: bioconductor: SPsimSeq
https://packages.ecosyste.ms/registries/bioconductor.org/packages/SPsimSeq
Semi-parametric simulation tool for bulk and single-cell RNA sequencing data
1 version
Latest release: almost 2 years ago
1 dependent package
3,393 downloads total
Enhanced Analysis
Repository Activity:
Repository Owner:
Ghent University - Center for Statistics (organization)
Repositories related to statistical research at Ghent University. Academic
Repositories related to statistical research at Ghent University. Academic
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+20
Academic repository owner
Repository owned by academic institution -
+15
Institutional repository owner
Repository owned by research institution -
+12
Science terms in README
6 scientific terms found in README
Very Likely Science (100)
Papers Mentioning SPsimSeq 4
10.3390/life11070716
Single-Cell Transcriptome Profiling Simulation Reveals the Impact of Sequencing Parameters and Algorithms on ClusteringCited by: 0
Author(s): Yunhe Liu, Aoshen Wu, Xueqing Peng, Xiaona Liu, Gang Liu, Lei Liu
Software Mentions: 15
Published: about 4 years ago
10.1186/s13059-021-02367-2
scDesign2: a transparent simulator that generates high-fidelity single-cell gene expression count data with gene correlations capturedCited by: 40
Author(s): Tianyi Sun, Dongyuan Song, Jingyi Jessica Li, Jingyi Jessica Li
Software Mentions: 7
Published: about 4 years ago
10.1186/s12864-020-6721-y
On the utility of RNA sample pooling to optimize cost and statistical power in RNA sequencing experimentsCited by: 50
Author(s): Alemu Takele Assefa, Jo Vandesompele, Olivier Thas
Software Mentions: 3
Published: over 5 years ago
10.1186/s13059-021-02394-z
Publisher Correction: scDesign2: a transparent simulator that generates high-fidelity single-cell gene expression count data with gene correlations capturedCited by: 0
Author(s): Tianyi Sun, Dongyuan Song, Jingyi Jessica Li, Jingyi Jessica Li
Software Mentions: 1
Published: about 4 years ago