Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-021-02367-2

https://doi.org/10.1186/s13059-021-02367-2

scDesign2: a transparent simulator that generates high-fidelity single-cell gene expression count data with gene correlations captured

Cited by: 40
Author(s): Tianyi Sun, Dongyuan Song, Jingyi Jessica Li, Jingyi Jessica Li
Published: over 3 years ago

Software Mentions 7

bioconductor: SC3
Single-Cell Consensus Clustering
Papers that mentioned: 71
bioconductor: SPsimSeq
Semi-parametric simulation tool for bulk and single-cell RNA sequencing data
Papers that mentioned: 4
cran: dyngen
A Multi-Modal Simulator for Spearheading Single-Cell Omics Analyses
Papers that mentioned: 2
cran: FiRE
Finder of Rare Entities (FiRE)
Papers that mentioned: 2
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
pypi: splat
SpeX Prism Library Analysis Toolkit
Papers that mentioned: 1
pypi: SymSim
Tool for simulating planes of symmetries assuming kinematic diffraction
Papers that mentioned: 7