Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1016/j.patter.2021.100322

https://doi.org/10.1016/j.patter.2021.100322

Cited by: 38
Author(s): Jeremy Leipzig, Daniel Nüst, Charles Tapley Hoyt, Karthik Ram, Jane Greenberg
Published: over 2 years ago

Software Mentions 21

bioconductor: Biobase
Biobase: Base functions for Bioconductor
Papers that mentioned: 104
bioconductor: BiocGenerics
S4 generic functions used in Bioconductor
Papers that mentioned: 15
bioconductor: BiocParallel
Bioconductor facilities for parallel evaluation
Papers that mentioned: 30
bioconductor: biocViews
Categorized views of R package repositories
Papers that mentioned: 4
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: genefilter
genefilter: methods for filtering genes from high-throughput experiments
Papers that mentioned: 142
bioconductor: geneplotter
Graphics related functions for Bioconductor
Papers that mentioned: 14
bioconductor: SummarizedExperiment
SummarizedExperiment container
Papers that mentioned: 52
bioconductor: tximeta
Transcript Quantification Import with Automatic Metadata
Papers that mentioned: 11
cran: EML
Read and Write Ecological Metadata Language Files
Papers that mentioned: 18
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: knitr
A General-Purpose Package for Dynamic Report Generation in R
Papers that mentioned: 157
cran: locfit
Local Regression, Likelihood and Density Estimation
Papers that mentioned: 35
cran: RColorBrewer
ColorBrewer Palettes
Papers that mentioned: 490
cran: Rcpp
Seamless R and C++ Integration
Papers that mentioned: 152
cran: RcppArmadillo
'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library
Papers that mentioned: 29
cran: SPARQL
SPARQL client
Papers that mentioned: 660
pypi: pip
The PyPA recommended tool for installing Python packages.
Papers that mentioned: 21
pypi: RO
Collection of utilities including general algorithms, astronomical transformations and Tkinter widgets
Papers that mentioned: 36
pypi: scikit-learn
A set of python modules for machine learning and data mining
Papers that mentioned: 2,431
pypi: shell
A better way to run shell commands in Python.
Papers that mentioned: 207