cran: locfit | Projects | Ecosyste.ms: Papers

10.12688/f1000research.17824.2

Enhancing gene set enrichment using networks
Cited by: 2
Author(s): Michael Prummer
Software Mentions: 51
Published: about 5 years ago

10.12688/f1000research.9973.2

BgeeDB, an R package for retrieval of curated expression datasets and for gene list expression localization enrichment tests
Cited by: 20
Author(s): Andrea Komljenović, Julien Roux, Julien Wollbrett, Marc Robinson‐Rechavi, Frederic Bastian
Software Mentions: 33
Published: about 6 years ago

10.3389/fninf.2019.00057

Comparing Open-Source Toolboxes for Processing and Analysis of Spike and Local Field Potentials Data
Cited by: 14
Author(s): Valentina A. Unakafova, Alexander Gail
Software Mentions: 23
Published: about 5 years ago

10.1016/j.patter.2021.100322

The role of metadata in reproducible computational research
Cited by: 38
Author(s): Jeremy Leipzig, Daniel Nüst, Charles Tapley Hoyt, Karthik Ram, Jane Greenberg
Software Mentions: 21
Published: about 3 years ago

10.1186/s12859-015-0683-0

diffHic: a Bioconductor package to detect differential genomic interactions in Hi-C data
Cited by: 172
Author(s): Aaron T. L. Lun, Gordon K. Smyth
Software Mentions: 14
Published: about 9 years ago

10.7554/eLife.49064

Stepwise polarisation of developing bilayered epidermis is mediated by aPKC and E-cadherin in zebrafish
Cited by: 10
Author(s): Prateek Arora, Shivali Dongre, Renuka Raman, Mahendra Sonawane
Software Mentions: 11
Published: over 4 years ago

10.1186/1471-2164-16-S7-S14

Differential expression analysis of RNA sequencing data by incorporating non-exonic mapped reads
Cited by: 12
Author(s): Hung I Harry Chen, Yuanhang Liu, Yi Zou, Zhao Lai, Devanand Sarkar, Yufei Huang, Yidong Chen
Software Mentions: 9
Published: over 9 years ago

10.1186/s12864-016-2848-2

ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences
Cited by: 21
Author(s): Wentao Yang, Philip Rosenstiel, Hinrich Schulenburg
Software Mentions: 8
Published: about 8 years ago

10.3389/fcimb.2019.00392

Early Transcriptional Landscapes of Chlamydia trachomatis-Infected Epithelial Cells at Single Cell Resolution
Cited by: 13
Author(s): Regan J. Hayward, J. Wallis Marsh, Michael S. Humphrys, Wilhelmina M. Huston, Garry Myers
Software Mentions: 6
Published: almost 5 years ago

10.1002/ece3.4061

Simple foraging rules in competitive environments can generate socially structured populations
Cited by: 32
Author(s): Maurício Cantor, Dan Farine
Software Mentions: 6
Published: over 6 years ago

10.1186/s40246-021-00323-6

An ensemble of the iCluster method to analyze longitudinal lncRNA expression data for psoriasis patients
Cited by: 2
Author(s): Suyan Tian, Chi Wang
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0187142

Spatial-temporal dynamics of neotropical velvet ant (Hymenoptera: Mutillidae) communities along a forest-savanna gradient
Cited by: 2
Author(s): Júlio Miguel Alvarenga, Cecília Rodrigues Vieira, Leandro Braga Godinho, Pedro Henrique Campelo, James P. Pitts, Guarino Rinaldi Colli
Software Mentions: 6
Published: almost 7 years ago

10.1371/journal.pone.0078120

Effective Population Size, Genetic Variation, and Their Relevance for Conservation: The Bighorn Sheep in Tiburon Island and Comparisons with Managed Artiodactyls
Cited by: 20
Author(s): Jaime Gasca-Pineda, Ivonne Cassaigne, Ricardo Alonso, Luis E. Eguiarte
Software Mentions: 5
Published: almost 11 years ago

10.3389/fgene.2019.00855

Variance-Preserving Estimation of Intensity Values Obtained From Omics Experiments
Cited by: 0
Author(s): Adele Ribeiro, Júlia Maria Pavan Soler, Roberto Hirata
Software Mentions: 5
Published: almost 5 years ago

10.5808/gi.21028

Forecasting of the COVID-19 pandemic situation of Korea
Cited by: 3
Author(s): Taewan Goo, Catherine Apio, Gyujin Heo, Doeun Lee, Jong Hyeok Lee, Jisun Lim, Kyulhee Han, Taesung Park
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0075029

High Genetic Diversity and Distinctiveness of Rear-Edge Climate Relicts Maintained by Ancient Tetraploidisation for Alnus glutinosa
Cited by: 44
Author(s): Olivier Lepais, Serge Müller, Samia Ben Saad-Limam, Mohamed Benslama, Laïla Rhazi, Djamila Belouahem-Abed, Amina Daoud-Bouattour, Amor Mokhtar Gammar, Zeineb Ghrabi-Gammar, Cecile F. E. Bacles
Software Mentions: 3
Published: almost 11 years ago

10.1186/s12864-016-2897-6

Detection of high variability in gene expression from single-cell RNA-seq profiling
Cited by: 35
Author(s): Hung I Harry Chen, Yufang Jin, Yufei Huang, Yidong Chen
Software Mentions: 3
Published: about 8 years ago

10.1186/s12938-016-0305-8

Probabilistic liver atlas construction
Cited by: 9
Author(s): Estrella Durá, Juan Carlos Ureta Domingo, Guillermo Ayala, Luis Martí‐Bonmatí, Evgin Göçeri
Software Mentions: 3
Published: over 7 years ago

10.3389/fmolb.2017.00025

A Balanced Approach to Adaptive Probability Density Estimation
Cited by: 3
Author(s): Julio A. Kovacs, Cailee Helmick, Willy Wriggers
Software Mentions: 3
Published: over 7 years ago

10.1186/gb-2010-11-10-r106

Differential expression analysis for sequence count data
Cited by: 12,645
Author(s): Simon Anders, Wolfgang Huber
Software Mentions: 3
Published: almost 14 years ago

10.18632/aging.102925

Alterations of hand sensorimotor function and cortical motor representations over the adult lifespan
Cited by: 6
Author(s): Melina Hehl, Stephan P. Swinnen, Koen Cuypers
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0037240

Millipede Taxonomy after 250 Years: Classification and Taxonomic Practices in a Mega-Diverse yet Understudied Arthropod Group
Cited by: 49
Author(s): Michael S. Brewer, Petra Sierwald, Jason E. Bond
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pgen.1005195

Temporal Expression Profiling Identifies Pathways Mediating Effect of Causal Variant on Phenotype
Cited by: 16
Author(s): Saumya Gupta, Aparna Radhakrishnan, Pandu Raharja-Liu, Gen Lin, Lars M. Steinmetz, Julien Gagneur, Himanshu Sinha
Software Mentions: 1
Published: over 9 years ago

10.1186/1472-6947-7-1

Relemed: sentence-level search engine with relevance score for the MEDLINE database of biomedical articles
Cited by: 66
Author(s): Mir S. Siadaty, Jianfen Shu, William A. Knaus
Software Mentions: 1
Published: over 17 years ago

10.1186/1755-8794-6-47

Vitamin D related genes in lung development and asthma pathogenesis
Cited by: 58
Author(s): Alvin T. Kho, Sunita Sharma, Weiliang Qiu, Roger Gaedigk, Barbara J. Klanderman, Simin Niu, Chris Anderson, J. Steven Leeder, Scott T. Weiss, Kelan G. Tantisira
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12915-015-0126-4

Dawn- and dusk-phased circadian transcription rhythms coordinate anabolic and catabolic functions in Neurospora
Cited by: 62
Author(s): Cigdem Sancar, Gencer Sancar, Nati Ha, François Cesbron, Michael Brunner
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2164-14-52

Transcriptome of the dead: characterisation of immune genes and marker development from necropsy samples in a free-ranging marine mammal
Cited by: 26
Author(s): Joseph I. Hoffman, Michael A. S. Thorne, Philip N. Trathan, Jaume Forcada
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pgen.1005891

Selection on Coding and Regulatory Variation Maintains Individuality in Major Urinary Protein Scent Marks in Wild Mice
Cited by: 44
Author(s): Michael J. Sheehan, Victoria Lee, Russell Corbett-Detig, Ke Bi, Robert J. Beynon, Jane L. Hurst, Michael W. Nachman
Software Mentions: 1
Published: over 8 years ago

10.1186/gb-2006-7-2-r13

Cited by: 170
Author(s): Tineke Casneuf, Stefanie De Bodt, Jeroen Raes, Steven Maere, Yves Van de Peer
Software Mentions: 1
Published: over 18 years ago

10.1093/aje/kwy114

Revealing Measles Outbreak Risk With a Nested Immunoglobulin G Serosurvey in Madagascar
Cited by: 21
Author(s): Amy Winter, Amy Wesolowski, Keitly Mensah, Miora Bruna Ramamonjiharisoa, Arthur Randriamanantena, Richter Razafindratsimandresy, Simon Cauchemez, Justin Lessler, Matt J. Ferrari, C Jessica E Metcalf, Jean Michel Héraud
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2156-14-44

Genome-wide linkage analysis of congenital heart defects using MOD score analysis identifies two novel loci
Cited by: 14
Author(s): Antònia Flaquer, Clemens Baumbach, Estefania Piñero, Fernando García Algas, María Angeles de la Fuente Sanchez, Jordi Rosell, Jorge Toquero, Luis Alonso‐Pulpón, Pablo García‐Pavía, Konstantin Strauch, Damián Heine-Suñer
Software Mentions: 1
Published: over 11 years ago

10.1002/jrsm.1185

Sequential biases in accumulating evidence
Cited by: 9
Author(s): Elena Kulinskaya, Richard Huggins, Samson Henry Dogo
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41598-020-77162-3

Robust alternative to the righting reflex to assess arousal in rodents
Cited by: 17
Author(s): Sijia Gao, Diany Paola Calderon
Software Mentions: 1
Published: almost 4 years ago

10.1534/g3.116.029900

Meiotic Interactors of a Mitotic Gene <i>TAO3</i> Revealed by Functional Analysis of its Rare Variant
Cited by: 5
Author(s): Saumya Gupta, Aparna Radhakrishnan, Rachana Nitin, Pandu Raharja-Liu, Gen Lin, Lars M. Steinmetz, Julien Gagneur, Himanshu Sinha
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pgen.1005105

Combinatorial Control of Light Induced Chromatin Remodeling and Gene Activation in Neurospora
Cited by: 45
Author(s): Cigdem Sancar, Nati Ha, Ruestem Yilmaz, Rafael A. Tesorero, Tamas Fisher, Michael Brunner, Gencer Sancar
Software Mentions: 1
Published: over 9 years ago

Ecosyste.ms: Papers

Projects: cran: locfit

Papers Mentioning locfit 35