Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: RcppArmadillo

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/RcppArmadillo

'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library
163 versions
Latest release: 12 months ago
96 dependent packages
404,674 downloads last month

Papers Mentioning RcppArmadillo 29

10.1016/j.patter.2021.100322

The role of metadata in reproducible computational research
Cited by: 38
Author(s): Jeremy Leipzig, Daniel Nüst, Charles Tapley Hoyt, Karthik Ram, Jane Greenberg
Software Mentions: 21
Published: about 3 years ago

10.3389/fmicb.2021.616013

Distribution of Bacterial Endophytes in the Non-lesion Tissues of Potato and Their Response to Potato Common Scab
Cited by: 7
Author(s): Wencong Shi, Gaoya Su, Mingcong Li, Bing Wang, Runmao Lin, Yang Yu-tian, Tao Wei, Bo Zhou, Zheng Gao
Software Mentions: 13
Published: over 3 years ago

10.1371/journal.pcbi.1006135

beachmat: A Bioconductor C++ API for accessing high-throughput biological data from a variety of R matrix types
Cited by: 13
Author(s): Aaron T. L. Lun, Hervé Pagès, Mike L. Smith
Software Mentions: 10
Published: over 6 years ago

10.1186/s12859-017-1538-7

stpm: an R package for stochastic process model
Cited by: 4
Author(s): Ilya Y. Zhbannikov, Konstantin G. Arbeev, Igor Akushevich, Eric Stallard, Anatoliy I. Yashin
Software Mentions: 9
Published: over 7 years ago

10.1186/s12864-021-07918-2

CeTF: an R/Bioconductor package for transcription factor co-expression networks using regulatory impact factors (RIF) and partial correlation and information (PCIT) analysis
Cited by: 10
Author(s): Carlos Alberto Oliveira de Biagi, Ricardo Perecin Nociti, Danielle Barbosa Brotto, Breno Osvaldo Funicheli, Patrícia de Cássia Ruy, João Paulo Bianchi Ximenez, David Livingstone Alves Figueiredo, Wilson A. Silva
Software Mentions: 8
Published: about 3 years ago

10.1038/s41598-017-11110-6

A Novel Statistical Method to Diagnose, Quantify and Correct Batch Effects in Genomic Studies
Cited by: 29
Author(s): Gift Nyamundanda, Pawan Poudel, Yatish Patil, Anguraj Sadanandam
Software Mentions: 8
Published: about 7 years ago

10.1186/s12859-018-2347-3

DM-PhyClus: a Bayesian phylogenetic algorithm for infectious disease transmission cluster inference
Cited by: 6
Author(s): Luc Villandré, Aurélie Labbe, Bluma G. Brenner, Michel Roger, David A. Stephens
Software Mentions: 7
Published: about 6 years ago

10.1186/s12859-017-1914-3

bcROCsurface: an R package for correcting verification bias in estimation of the ROC surface and its volume for continuous diagnostic tests
Cited by: 6
Author(s): Khanh To Duc
Software Mentions: 7
Published: almost 7 years ago

10.1186/s13059-019-1743-y

CONFINED: distinguishing biological from technical sources of variation by leveraging multiple methylation datasets
Cited by: 6
Author(s): Michael Thompson, Zeyuan Johnson Chen, Elior Rahmani, Eran Halperin
Software Mentions: 6
Published: over 5 years ago

10.1186/s12859-020-03715-y

MCMSeq: Bayesian hierarchical modeling of clustered and repeated measures RNA sequencing experiments
Cited by: 8
Author(s): Brian Vestal, Camille M. Moore, Elizabeth Wynn, Laura Saba, Tasha E. Fingerlin, Katerina Kechris
Software Mentions: 6
Published: about 4 years ago

10.7554/eLife.68699

Multi-syndrome, multi-gene risk modeling for individuals with a family history of cancer with the novel R package PanelPRO
Cited by: 9
Author(s): Gavin Lee, Jane W. Liang, Qing Zhang, Theodore Huang, Christine Choirat, Giovanni Parmigani, Danielle Braun
Software Mentions: 5
Published: about 3 years ago

10.1186/1471-2105-15-172

hsphase: an R package for pedigree reconstruction, detection of recombination events, phasing and imputation of half-sib family groups
Cited by: 31
Author(s): Mohammad Ferdosi, Brian Kinghorn, J. H. J. van der Werf, Seung H. Lee, Cedric Gondro
Software Mentions: 5
Published: over 10 years ago

10.7717/peerj-cs.243

HACSim: an R package to estimate intraspecific sample sizes for genetic diversity assessment using haplotype accumulation curves
Cited by: 15
Author(s): Jarrett D. Phillips, Steven H. French, Robert Hanner, Daniel Gillis
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0163711

hemaClass.org: Online One-By-One Microarray Normalization and Classification of Hematological Cancers for Precision Medicine
Cited by: 7
Author(s): Steffen Falgreen, Anders Ellern Bilgrau, Rasmus Froberg Brøndum, Lasse Hjort Jakobsen, Jonas Have, Kasper Lindblad Nielsen, Tarec Christoffer El‐Galaly, Julie Støve Bødker, Alexander Schmitz, Ken H. Young, Hans Erik Johnsen, Karen Dybkær, Martin Bøgsted
Software Mentions: 5
Published: about 8 years ago

10.1007/s00180-021-01102-6

Direct statistical inference for finite Markov jump processes via the matrix exponential
Cited by: 5
Author(s): Chris Sherlock
Software Mentions: 5
Published: over 3 years ago

10.1002/ece3.4850

Efficient Bayesian analysis of occupancy models with logit link functions
Cited by: 15
Author(s): Allan Clark, Res Altwegg
Software Mentions: 5
Published: almost 6 years ago

10.1093/g3journal/jkaa017

AlphaSimR: an R package for breeding program simulations
Cited by: 88
Author(s): R. Chris Gaynor, Gregor Gorjanc, John M. Hickey
Software Mentions: 5
Published: almost 4 years ago

10.1038/srep09066

Hardy-Weinberg equilibrium revisited for inferences on genotypes featuring allele and copy-number variations
Cited by: 3
Author(s): Andreas Recke, Klaus-Günther Recke, Saleh M. Ibrahim, Steffen Möller, Reinhard Vonthein
Software Mentions: 5
Published: over 9 years ago

10.1038/tp.2017.177

Genome-wide expression and response to exposure-based psychological therapy for anxiety disorders
Cited by: 15
Author(s): Stephen K. Roberts, Chloe Wong, Gerome Breen, Jonathan R. I. Coleman, Simone de Jong, Peter Jöhren, Robert Keers, Charles Curtis, Sang Hyuck Lee, Jürgen Margraf, Silvia Schneider, Tobias Teismann, André Wannemüller, Kathryn J. Lester, Thalia C. Eley
Software Mentions: 5
Published: about 7 years ago

10.7554/eLife.21778

Non-coding cancer driver candidates identified with a sample- and position-specific model of the somatic mutation rate
Cited by: 36
Author(s): Malene Juul, Johanna Bertl, Qianyun Guo, Morten Muhlig Nielsen, Michał P. Świtnicki, Henrik Hornshøj, Tobias Madsen, Asger Hobolth, Jakob Skou Pedersen
Software Mentions: 5
Published: over 7 years ago

10.1186/s13073-019-0643-9

Associating somatic mutations to clinical outcomes: a pan-cancer study of survival time
Cited by: 8
Author(s): Paul Little, Danyu Lin, Wei Sun
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.48401

Accelerated viral dynamics in bat cell lines, with implications for zoonotic emergence
Cited by: 83
Author(s): Cara E. Brook, Mike Boots, Kartik Chandran, Andrew Dobson, Christian Drosten, Andrea L. Graham, Bryan T. Grenfell, Marcel A. Müller, Melinda Ng, Lin‐Fa Wang, Anieke van Leeuwen
Software Mentions: 3
Published: over 4 years ago

10.1093/bioinformatics/btw705

KODAMA: an R package for knowledge discovery and data mining
Cited by: 28
Author(s): Stefano Cacciatore, Leonardo Tenori, Claudio Luchinat, Phillip R. Bennett, David A. MacIntyre
Software Mentions: 3
Published: almost 8 years ago

10.1038/s41598-018-28701-6

Reconciling differences in natural tags to infer demographic and genetic connectivity in marine fish populations
Cited by: 30
Author(s): Ruth Patrick, Susanne E. Tanner, Maria Ana Aboim, Rita P. Vasconcelos, Jean Laroche, Grégory Charrier, Montse Pérez, Pablo Presa, Bronwyn M. Gillanders, Henrique N. Cabral
Software Mentions: 3
Published: over 6 years ago

10.1186/s12859-020-03640-0

MicroBVS: Dirichlet-tree multinomial regression models with Bayesian variable selection - an R package
Cited by: 6
Author(s): Matthew D. Koslovsky, Marina Vannucci
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0222664

Direct estimation of the parameters of a delayed, intermittent activation feedback model of postural sway during quiet standing
Cited by: 13
Author(s): Kevin L. McKee, Michael C. Neale
Software Mentions: 2
Published: about 5 years ago

10.1534/g3.116.038612

Time-Variant Genetic Effects as a Cause for Preterm Birth: Insights from a Population of Maternal Cousins in Sweden
Cited by: 6
Author(s): Julius Juodakis, Jonas Bacelis, Ge Zhang, Louis J. Muglia, Bo Jacobsson
Software Mentions: 2
Published: over 7 years ago

10.1007/s00285-017-1100-2

Oscillating systems with cointegrated phase processes
Cited by: 7
Author(s): Jacob Østergaard, Anders Rahbek, Susanne Ditlevsen
Software Mentions: 2
Published: over 7 years ago

10.1002/mrm.25723

Microstructural parameter estimation in vivo using diffusion MRI and structured prior information
Cited by: 12
Author(s): Jonathan D. Clayden, Zoltán Nagy, Nikolaus Weiskopf, Daniel C. Alexander, Chris A. Clark
Software Mentions: 2
Published: over 9 years ago