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Papers: 10.1371/journal.pcbi.1006135

https://doi.org/10.1371/journal.pcbi.1006135

beachmat: A Bioconductor C++ API for accessing high-throughput biological data from a variety of R matrix types

Cited by: 13
Author(s): Aaron T. L. Lun, Hervé Pagès, Mike L. Smith
Published: about 7 years ago

Software Mentions 10

bioconductor: beachmat
Compiling Bioconductor to Handle Each Matrix Type
Papers that mentioned: 3
Very Likely Science (100)
bioconductor: DelayedArray
A unified framework for working transparently with on-disk and in-memory array-like datasets
Papers that mentioned: 6
Very Likely Science (75)
bioconductor: HDF5Array
HDF5 backend for DelayedArray objects
Papers that mentioned: 3
Very Likely Science (90)
bioconductor: scater
Single-Cell Analysis Toolkit for Gene Expression Data in R
Papers that mentioned: 79
Very Likely Science (100)
bioconductor: scran
Methods for Single-Cell RNA-Seq Data Analysis
Papers that mentioned: 113
Very Likely Science (100)
cran: bigmemory
Manage Massive Matrices with Shared Memory and Memory-Mapped Files
Papers that mentioned: 10
Very Likely Science (77)
cran: Matrix
Sparse and Dense Matrix Classes and Methods
Papers that mentioned: 172
Very Likely Science (75)
cran: Rcpp
Seamless R and C++ Integration
Papers that mentioned: 152
Very Likely Science (100)
cran: RcppArmadillo
'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library
Papers that mentioned: 29
Very Likely Science (100)
cran: RcppEigen
'Rcpp' Integration for the 'Eigen' Templated Linear Algebra Library
Papers that mentioned: 12
Very Likely Science (100)