Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: geneplotter
https://packages.ecosyste.ms/registries/bioconductor.org/packages/geneplotter
Graphics related functions for Bioconductor
2 versions
Latest release: 9 months ago
9 dependent packages
2,222,492 downloads total
Papers Mentioning geneplotter 14
10.1371/journal.pcbi.1000227
Analyzing ChIP-chip Data Using BioconductorCited by: 19
Author(s): Joern Toedling, Wolfgang Huber
Software Mentions: 39
Published: over 15 years ago
10.1016/j.patter.2021.100322
The role of metadata in reproducible computational researchCited by: 38
Author(s): Jeremy Leipzig, Daniel Nüst, Charles Tapley Hoyt, Karthik Ram, Jane Greenberg
Software Mentions: 21
Published: almost 3 years ago
10.1186/1471-2164-9-419
Transcriptomic responses to 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) in liver: Comparison of rat and mouseCited by: 74
Author(s): Paul C. Boutros, Rui Yan, Ivy D. Moffat, Raimo Pohjanvirta, Allan B. Okey
Software Mentions: 11
Published: over 16 years ago
10.1155/2008/147563
Bioinformatic Tools for Inferring Functional Information from Plant Microarray Data: Tools for the First StepsCited by: 6
Author(s): Grier P. Page, Issa Coulibaly
Software Mentions: 10
Published: about 16 years ago
10.1186/1471-2105-8-221
Ringo – an R/Bioconductor package for analyzing ChIP-chip readoutsCited by: 156
Author(s): Joern Toedling, Oleg Sklyar, Wolfgang Huber
Software Mentions: 9
Published: about 17 years ago
10.1371/journal.pone.0018337
mRNA Levels in Control Rat Liver Display Strain-Specific, Hereditary, and AHR-Dependent ComponentsCited by: 7
Author(s): Paul C. Boutros, Ivy D. Moffat, Allan B. Okey, Raimo Pohjanvirta
Software Mentions: 9
Published: about 13 years ago
10.1186/s12859-018-2069-6
A gene profiling deconvolution approach to estimating immune cell composition from complex tissuesCited by: 12
Author(s): Shu Hwa Chen, Wen Yu Kuo, Sheng Su, Wei Chun Chung, Jen Ming Ho, Henry Horng Shing Lu, Chung Yen Lin
Software Mentions: 8
Published: about 6 years ago
10.1186/s13058-016-0758-5
Patient survival and tumor characteristics associated with CHEK2:p.I157T – findings from the Breast Cancer Association ConsortiumCited by: 37
Author(s): Taru Muranen, Carl Blomqvist, Thilo Dörk, Anna Jakubowska, Päivi Heikkilä, Rainer Fagerholm, Dario Greco, Kristiina Aittomäki, Stig E. Bojesen, Mitul Shah, Alison M. Dunning, Valerie Rhenius, Per Hall, Kamila Czene, Judith S. Brand, Hatef Darabi, Jenny Chang–Claude, Anja Rudolph, Børge G. Nordestgaard, Fergus J. Couch, Steven N. Hart, Jonine D. Figueroa, Montserrat García‐Closas, Peter A. Fasching, Matthias W. Beckmann, Jingmei Li, Jing Liu, Irene L. Andrulis, Robert Winqvist, Katri Pylkäs, Arto Mannermaa, Vesa Kataja, Annika Lindblom, Sara Margolin, Jan Lubiński, Natalia Dubrowinskaja, Manjeet K. Bolla, Joe Dennis, Kyriaki Michailidou, Qin Wang, Douglas F. Easton, Paul D.P. Pharoah, Marjanka K. Schmidt, Heli Nevanlinna
Software Mentions: 8
Published: almost 8 years ago
10.1186/1471-2105-11-450
Filtering, FDR and powerCited by: 43
Author(s): Maarten van Iterson, Judith M. Boer, Renée X. de Menezes
Software Mentions: 8
Published: almost 14 years ago
10.1186/s12864-019-6179-y
Transcriptional variation and divergence of host-finding behaviour in Steinernema carpocapsae infective juvenilesCited by: 5
Author(s): Neil D. Warnock, Deborah Cox, Ciaran J. McCoy, Robert Morris, Johnathan J. Dalzell
Software Mentions: 5
Published: over 4 years ago
10.1186/s13148-015-0131-z
Epigenetic synergy between decitabine and platinum derivativesCited by: 32
Author(s): Taichun Qin, Jiali Si, Noël J.-M. Raynal, Xiaodan Wang, Vazganush Gharibyan, Saira Ahmed, Xin Hu, Chunlei Jin, Yue Lu, Jingmin Shu, Marcos R.H. Estécio, Jaroslav Jelı́nek, Jean–Pierre J. Issa
Software Mentions: 3
Published: almost 9 years ago
10.1186/s12864-019-5718-x
Transcriptomic profiling reveals MEP pathway contributing to ginsenoside biosynthesis in Panax ginsengCited by: 36
Author(s): Le Xue, Zilong He, Xiaochun Bi, Wei Xü, Ting Wei, Shuangxiu Wu, Songnian Hu
Software Mentions: 2
Published: about 5 years ago
10.1186/1471-2156-9-14
Analysis of genetic variation in Ashkenazi Jews by high density SNP genotypingCited by: 35
Author(s): Adam B. Olshen, Bert Gold, Kirk E. Lohmueller, Jeffery P. Struewing, Jaya M. Satagopan, Стефан Стефанов, Eleazar Eskin, Tomas Kirchhoff, James A. Lautenberger, Robert J. Klein, Eitan Friedman, Larry Norton, Nathan A. Ellis, Agnès Viale, Catherine S. Lee, Patrick I. Borgen, Andrew G. Clark, Kenneth Offit, Jeff Boyd
Software Mentions: 2
Published: over 16 years ago
10.1371/journal.pone.0134869
Towards Personalized Cardiology: Multi-Scale Modeling of the Failing HeartCited by: 66
Author(s): Elham Kayvanpour, Tommaso Mansi, Farbod Sedaghat‐Hamedani, Ali Amr, Dominik Neumann, Bogdan Georgescu, Philipp Seegerer, Ali Kamen, Jan Haas, Karen Frese, Maria Irawati, Emil Wirsz, Vanessa M. King, Sebastian J. Buss, Derliz Mereles, Edgar Zitron, Andreas Keller, Hugo A. Katus, Dorin Comanicìu, Benjamin Meder
Software Mentions: 1
Published: almost 9 years ago