Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/1471-2105-8-221

https://doi.org/10.1186/1471-2105-8-221

Ringo – an R/Bioconductor package for analyzing ChIP-chip readouts

Cited by: 156
Author(s): Joern Toedling, Oleg Sklyar, Wolfgang Huber
Published: over 17 years ago

Software Mentions 9

bioconductor: ACME
Algorithms for Calculating Microarray Enrichment (ACME)
Papers that mentioned: 63
bioconductor: affy
Methods for Affymetrix Oligonucleotide Arrays
Papers that mentioned: 989
bioconductor: Biobase
Biobase: Base functions for Bioconductor
Papers that mentioned: 104
bioconductor: geneplotter
Graphics related functions for Bioconductor
Papers that mentioned: 14
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: Ringo
R Investigation of ChIP-chip Oligoarrays
Papers that mentioned: 36
bioconductor: vsn
Variance stabilization and calibration for microarray data
Papers that mentioned: 91
cran: MAT
Multidimensional Adaptive Testing
Papers that mentioned: 216
cran: RColorBrewer
ColorBrewer Palettes
Papers that mentioned: 490