Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.12688/f1000research.22259.1
https://doi.org/10.12688/f1000research.22259.1
Cited by: 2
Author(s): Stuart Lee, Michael C. Lawrence, Michael I. Love
Published: over 4 years ago
Software Mentions 35
bioconductor: BiocParallel
Bioconductor facilities for parallel evaluationPapers that mentioned: 30
bioconductor: DelayedArray
A unified framework for working transparently with on-disk and in-memory array-like datasetsPapers that mentioned: 6
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
bioconductor: GenomeInfoDb
Utilities for manipulating chromosome names, including modifying them to follow a particular naming stylePapers that mentioned: 7
bioconductor: GenomicRanges
Representation and manipulation of genomic intervalsPapers that mentioned: 323
bioconductor: IRanges
Foundation of integer range manipulation in BioconductorPapers that mentioned: 62
bioconductor: Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file importPapers that mentioned: 138
bioconductor: rtracklayer
R interface to genome annotation files and the UCSC genome browserPapers that mentioned: 107
bioconductor: S4Vectors
Foundation of vector-like and list-like containers in BioconductorPapers that mentioned: 7
bioconductor: tximeta
Transcript Quantification Import with Automatic MetadataPapers that mentioned: 11
bioconductor: XVector
Foundation of external vector representation and manipulation in BioconductorPapers that mentioned: 3
cran: matrixStats
Functions that Apply to Rows and Columns of Matrices (and to Vectors)Papers that mentioned: 46
cran: rappdirs
Application Directories: Determine Where to Save Data, Caches, and LogsPapers that mentioned: 2