cran: purrr | Projects | Ecosyste.ms: Papers

10.1371/journal.pcbi.1007912

bigPint: A Bioconductor visualization package that makes big data pint-sized
Cited by: 3
Author(s): Lindsay Rutter, Dianne Cook
Software Mentions: 47
Published: over 4 years ago

10.12688/f1000research.22259.1

Fluent genomics with plyranges and tximeta
Cited by: 2
Author(s): Stuart Lee, Michael C. Lawrence, Michael I. Love
Software Mentions: 35
Published: almost 5 years ago

Selection on vocal output affects laryngeal morphology in rats
Cited by: 6
Author(s): Raffaela Lesch, Thomas Schwaha, Andrea Orozco, Margaret Shilling, Susan A. Brunelli, Myron A. Hofer, Daniel L. Bowling, Betty Zimmerberg, W. Tecumseh Fitch
Software Mentions: 25
Published: almost 4 years ago

10.1037/rev0000169

Simultaneous consonance in music perception and composition.
Cited by: 47
Author(s): Peter M. C. Harrison, Marcus T. Pearce
Software Mentions: 23
Published: over 4 years ago

10.3390/cells8091045

Systematic Assessment of Blood-Borne MicroRNAs Highlights Molecular Profiles of Endurance Sport and Carbohydrate Uptake
Cited by: 12
Author(s): Fabian Kern, Nicole Ludwig, Christina Backes, Esther Maldener, Tobias Fehlmann, Artur Suleymanov, Eckart Meese, Anne Hecksteden, Andreas Keller, Tim Meyer
Software Mentions: 21
Published: about 5 years ago

10.12688/gatesopenres.12832.2

DataPackageR: Reproducible data preprocessing, standardization and sharing using R/Bioconductor for collaborative data analysis
Cited by: 7
Author(s): Greg Finak, Bryan T. Mayer, William J. Fulp, Paul Obrecht, Alicia Sato, Eva Yin-han Chung, Drienna Holman, Raphaël Gottardo
Software Mentions: 19
Published: over 6 years ago

10.3390/brainsci11081017

Facial Signals and Social Actions in Multimodal Face-to-Face Interaction
Cited by: 14
Author(s): Naomi Nota, James P. Trujillo, Judith Holler
Software Mentions: 17
Published: over 3 years ago

10.1001/jamanetworkopen.2020.37227

Trends in US Pediatric Hospital Admissions in 2020 Compared With the Decade Before the COVID-19 Pandemic
Cited by: 115
Author(s): Jonathan Pelletier, Jaskaran Rakkar, Alicia K. Au, Dana Y. Fuhrman, Robert S. B. Clark, Christopher M. Horvat
Software Mentions: 17
Published: almost 4 years ago

10.3389/fpsyg.2021.627561

Automatic Facial Expression Recognition in Standardized and Non-standardized Emotional Expressions
Cited by: 41
Author(s): Theresa Küntzler, T. Tim A. Höfling, Georg W. Alpers
Software Mentions: 16
Published: over 3 years ago

10.7554/eLife.21883

Layer-specific chromatin accessibility landscapes reveal regulatory networks in adult mouse visual cortex
Cited by: 72
Author(s): Lucas T. Gray, Zizhen Yao, Thuc Nghi Nguyen, Tae Kyung Kim, Hongkui Zeng, Bosiljka Tasic
Software Mentions: 16
Published: almost 8 years ago

10.1371/journal.pone.0219892

Quantification and isolation of Bacillus subtilis spores using cell sorting and automated gating
Cited by: 18
Author(s): Marianna Karava, Felix Bracharz, Johannes Kabisch
Software Mentions: 15
Published: over 5 years ago

10.3389/fonc.2020.575422

A Novel Model Based on CXCL8-Derived Radiomics for Prognosis Prediction in Colorectal Cancer
Cited by: 8
Author(s): Yanpeng Chu, Jie Li, Zong Yuan Zeng, Bin Huang, Jiaojiao Zhao, Qin Liu, Huaping Wu, Jiangping Fu, Zheng Yin, Yefan Zhang, Jianqiang Cai, Fanxin Zeng
Software Mentions: 14
Published: about 4 years ago

10.1038/s41598-020-76843-3

Analyzing long-term impacts of ungulate herbivory on forest-recruitment dynamics at community and species level contrasting tree densities versus maximum heights
Cited by: 10
Author(s): Ursula Nopp‐Mayr, Susanne Reimoser, Friedrich Reimoser, Frederik Sachser, Leopold Obermair, Georg Gratzer
Software Mentions: 14
Published: about 4 years ago

10.3390/ijms20174162

SILAC-Based Quantification of TGFBR2-Regulated Protein Expression in Extracellular Vesicles of Microsatellite Unstable Colorectal Cancers
Cited by: 13
Author(s): Fabia Fricke, Malwina Michalak, Uwe Warnken, Ingrid Haußer, Martina Schnölzer, Jürgen Kopitz, Johannes Gebert
Software Mentions: 14
Published: about 5 years ago

10.1371/journal.pone.0218310

Evaluating health facility access using Bayesian spatial models and location analysis methods
Cited by: 8
Author(s): Nicholas Tierney, Antonietta Mira, H Reinhold, Giuseppe Arbia, Samuel Clifford, Angelo Auricchio, Tiziano Moccetti, Stefano Peluso, Kerrie Mengersen
Software Mentions: 14
Published: over 5 years ago

10.1186/s13059-020-02233-7

tidybulk: an R tidy framework for modular transcriptomic data analysis
Cited by: 22
Author(s): Stefano Mangiola, Ramyar Molania, Ruining Dong, Maria A. Doyle, Anthony T. Papenfuss
Software Mentions: 13
Published: almost 4 years ago

10.3389/fnut.2021.642612

The Association of Meat Intake With All-Cause Mortality and Acute Myocardial Infarction Is Age-Dependent in Patients With Stable Angina Pectoris
Cited by: 2
Author(s): Åslaug Oddsdatter Matre, Anthea Van Parys, Trond E. Olsen, Teresa Haugsgjerd, Carl Michael Baravelli, Ottar Nygård, Jutta Dierkes, Vegard Lysne
Software Mentions: 12
Published: over 3 years ago

10.1111/test.12258

Some teaching resources using R with illustrative examples exploring COVID ‐19 data
Cited by: 0
Author(s): Arthur Berg, Nour Hawila
Software Mentions: 12
Published: over 3 years ago

10.12688/gatesopenres.12929.1

Towards an off-grid fecal sludge treatment unit: demonstrating energy positive thermal treatment
Cited by: 1
Author(s): Taylor Myers, Lars Schoebitz, Stuart Woolley, Jaime Sanchez Ferragut, James O. Thostenson, Kathy Jooss, Jeffery Piascik, August Frechette, Nico Hotz, Brian R. Stoner, J.B. Hallowell
Software Mentions: 12
Published: over 5 years ago

10.1534/g3.120.401527

rdmc: An Open Source R Package Implementing Convergent Adaptation Models of Lee and Coop (2017)
Cited by: 2
Author(s): Silas Tittes
Software Mentions: 12
Published: about 4 years ago

10.1093/aobpla/plz054

tealeaves: an R package for modelling leaf temperature using energy budgets
Cited by: 26
Author(s): Christopher D. Muir
Software Mentions: 12
Published: about 5 years ago

10.1186/s12998-019-0261-z

Concurrent validity of lower extremity kinematics and jump characteristics captured in pre-school children by a markerless 3D motion capture system
Cited by: 23
Author(s): Steen Harsted, Anders Holsgaard-Larsen, Lise Hestbæk, Eleanor Boyle, Henrik Hein Lauridsen
Software Mentions: 12
Published: over 5 years ago

10.1017/S003329171800315X

A machine learning ensemble to predict treatment outcomes following an Internet intervention for depression
Cited by: 37
Author(s): Rahel Pearson, Derek Pisner, Björn Meyer, Jason Shumake, Christopher G. Beevers
Software Mentions: 11
Published: about 6 years ago

10.7717/peerj.4152

Population structure and phenotypic variation of<i>Sclerotinia sclerotiorum</i>from dry bean (<i>Phaseolus vulgaris</i>) in the United States
Cited by: 28
Author(s): Zhian N. Kamvar, Bimal S. Amaradasa, Rachana Jhala, Serena McCoy, James R. Steadman, Sydney E. Everhart
Software Mentions: 11
Published: almost 7 years ago

10.1038/s41598-021-89020-x

Gene-environment dependencies lead to collider bias in models with polygenic scores
Cited by: 29
Author(s): Evelina T. Akimova, Richard Breen, David M. Brazel, Melinda Mills
Software Mentions: 11
Published: over 3 years ago

10.7554/eLife.49064

Stepwise polarisation of developing bilayered epidermis is mediated by aPKC and E-cadherin in zebrafish
Cited by: 10
Author(s): Prateek Arora, Shivali Dongre, Renuka Raman, Mahendra Sonawane
Software Mentions: 11
Published: almost 5 years ago

10.1002/ece3.4823

Animal movement tools (amt): R package for managing tracking data and conducting habitat selection analyses
Cited by: 274
Author(s): Johannes Signer, John Fieberg, Tal Avgar
Software Mentions: 10
Published: almost 6 years ago

10.1186/s11689-021-09360-7

Modeling familial predictors of proband outcomes in neurogenetic disorders: initial application in XYY syndrome
Cited by: 3
Author(s): Kathleen Wilson, Ari M. Fish, Catherine Mankiw, Anastasia Xenophontos, Allysa Warling, Ethan T. Whitman, Liv S. Clasen, Erin Torres, Jonathan D. Blumenthal, Armin Raznahan
Software Mentions: 10
Published: over 3 years ago

10.1098/rsos.191333

Now or never: noticing occurs early in sustained inattentional blindness
Cited by: 4
Author(s): Katherine Wood, Daniel J. Simons
Software Mentions: 10
Published: about 5 years ago

10.12688/wellcomeopenres.14694.1

RhierBAPS: An R implementation of the population clustering algorithm hierBAPS
Cited by: 161
Author(s): Gerry Tonkin‐Hill, John A. Lees, Stephen D. Bentley, Simon D. W. Frost, Jukka Corander
Software Mentions: 9
Published: over 6 years ago

10.3390/ani10040546

The Welfare Aggregation and Guidance (WAG) Tool: A New Method to Summarize Global Welfare Assessment Data for Equids
Cited by: 11
Author(s): Laura M Kubasiewicz, João B. Rodrigues, Stuart L. Norris, Tamlin Watson, Karen Rickards, Nikki Bell, Andrew Judge, Zoe Raw, Faith Burden
Software Mentions: 9
Published: over 4 years ago

10.1371/journal.pone.0226069

Short-term treatment with a peroxisome proliferator-activated receptor α agonist influences plasma one-carbon metabolites and B-vitamin status in rats
Cited by: 3
Author(s): Vegard Lysne, Bodil Bjørndal, Mari Lausund Grinna, Øivind Midttun, Per Magne Ueland, Rolf K. Berge, Jutta Dierkes, Ottar Nygård, Elin Strand
Software Mentions: 9
Published: almost 5 years ago

10.1017/S0950268820000758

Development and external-validation of a nomogram for predicting the survival of hospitalised HIV/AIDS patients based on a large study cohort in western China
Cited by: 5
Author(s): Zongxiang Yuan, Bo Zhou, Sirun Meng, Jie Jiang, Shenghong Huang, Xiang Lu, Nianning Wu, Zhongkui Xie, Jianning Deng, X. Chen, J. Liu, J. Zhang, Fengyao Wu, Hao Liang, L. Ye
Software Mentions: 8
Published: almost 5 years ago

10.7717/peerj.11031

A fresh look at an old concept: home-range estimation in a tidy world
Cited by: 25
Author(s): Johannes Signer, John Fieberg
Software Mentions: 8
Published: over 3 years ago

10.3390/molecules26123564

Differential Glycosite Profiling—A Versatile Method to Compare Membrane Glycoproteomes
Cited by: 0
Author(s): Malwina Michalak, Martin Simon Kalteis, Aysel Ahadova, Matthias Kloor, Mark Kriegsmann, Katharina Kriegsmann, Uwe Warnken, Dominic Helm, Jürgen Kopitz
Software Mentions: 8
Published: over 3 years ago

10.1016/S2542-5196(21)00030-9

Identifying urban hotspots of dengue, chikungunya, and Zika transmission in Mexico to support risk stratification efforts: a spatial analysis
Cited by: 28
Author(s): Felipe Dzul-Manzanilla, Fabián Correa-Morales, Azael Che-Mendoza, Jorge Palacio-Vargas, Gustavo Sánchez-Tejeda, Jesús Felipe González-Roldán, Hugo López‐Gatell, Adriana E. Flores-Suárez, Héctor Gómez–Dantés, Giovanini Evelim Coelho, Haroldo Sergio da Silva Bezerra, Norma Pavía-Ruz, Audrey Lenhart, Pablo Manrique-Saide, Gonzalo M. Vázquez-Prokopec
Software Mentions: 8
Published: over 3 years ago

10.5696/2156-9614-10.27.200912

Levels of PM10 and PM2.5 and Respiratory Health Impacts on School-Going Children in Kenya
Cited by: 8
Author(s): Faridah Hussein Were, Godfrey A. Wafula, Cromwel B Lukorito, Timothy Kamanu
Software Mentions: 8
Published: about 4 years ago

10.1186/s12859-016-1088-4

RevEcoR: an R package for the reverse ecology analysis of microbiomes
Cited by: 22
Author(s): Yang Cao, Yuanyuan Wang, Xiaofei Zheng, Fēi Li, Xiaochen Bo
Software Mentions: 7
Published: over 8 years ago

10.2196/15554

Longitudinal Study of the Variation in Patient Turnover and Patient-to-Nurse Ratio: Descriptive Analysis of a Swiss University Hospital
Cited by: 11
Author(s): Sarah N. Musy, Olga Endrich, Alexander Benedikt Leichtle, Peter Griffiths, Christos T. Nakas, Michaël Simon
Software Mentions: 7
Published: over 4 years ago

10.1371/journal.pone.0221487

AdequacyModel: An R package for probability distributions and general purpose optimization
Cited by: 36
Author(s): Pedro Rafael Diniz Marinho, Rodrigo B. Silva, Marcelo Bourguignon, Gauss M. Cordeiro, Saralees Nadarajah
Software Mentions: 6
Published: about 5 years ago

10.1038/s41598-021-83338-2

Inclusion of genetic variants in an ensemble of gradient boosting decision trees does not improve the prediction of citalopram treatment response
Cited by: 6
Author(s): Jason Shumake, Travis T. Mallard, John E. McGeary, Christopher G. Beevers
Software Mentions: 6
Published: almost 4 years ago

10.1186/s41235-019-0164-5

The spatial allocation of attention in an interactive environment
Cited by: 2
Author(s): Katherine Wood, Daniel J. Simons
Software Mentions: 6
Published: over 5 years ago

10.3389/fpsyg.2019.02243

Pragmatic Language Skills: A Comparison of Children With Cochlear Implants and Children Without Hearing Loss
Cited by: 20
Author(s): Michaela Socher, Björn Lyxell, Rachel Ellis, Malin Gärskog, Ingrid Hedström, Malin Wass
Software Mentions: 6
Published: about 5 years ago

10.12688/f1000research.25141.1

CRI iAtlas: an interactive portal for immuno-oncology research
Cited by: 33
Author(s): James A. Eddy, Vésteinn Thórsson, Andrew Lamb, David L. Gibbs, Carolina Heimann, Jia Yu, Verena Chung, Yooree Chae, Kristen K. Dang, Benjamin G. Vincent, Ilya Shmulevich, Justin Guinney
Software Mentions: 6
Published: about 4 years ago

10.1111/acel.13441

Youthful and age‐related matreotypes predict drugs promoting longevity
Cited by: 25
Author(s): Cyril Statzer, Elisabeth Jongsma, Sean X Liu, Alexander Dakhovnik, Franziska Wandrey, Pavlo Mozharovskyi, Fred Zülli, Collin Y. Ewald
Software Mentions: 5
Published: over 3 years ago

10.1093/gigascience/gix101

LAGOS-NE: a multi-scaled geospatial and temporal database of lake ecological context and water quality for thousands of US lakes
Cited by: 97
Author(s): Patricia A. Soranno, Linda C. Bacon, Michael Beauchene, Karen E. Bednar, Edward G. Bissell, Claire Boudreau, Marvin G. Boyer, Mary T. Bremigan, Stephen R. Carpenter, J. Carr, Kendra Spence Cheruvelil, Samuel T. Christel, Matt Claucherty, Sarah M. Collins, Joseph D. Conroy, John A. Downing, Jed Dukett, C. Emi Fergus, Christopher T. Filstrup, Clara Funk, María J. González, Linda T. Green, Corinna Gries, John D. Halfman, Stephen K. Hamilton, Paul C. Hanson, Emily Norton Henry, Elizabeth Herron, Celeste Hockings, James R. Jackson, Kari Jacobson-Hedin, Lorraine L. Janus, William A. Jones, John R. Jones, Caroline M. Keson, Katelyn B. S. King, Scott A. Kishbaugh, Jean‐François Lapierre, Barbara Lathrop, Jo A. Latimore, Yuehlin Lee, Noah R. Lottig, Jason Lynch, Leslie J. Matthews, William H. McDowell, Karen Moore, Brian P. Neff, Sarah J. Nelson, Samantha Oliver, Michael L. Pace, Donald C. Pierson, Autumn Poisson, Amina I. Pollard, David M. Post, Paul O. Reyes, Donald O. Rosenberry, Karen M. Roy, Lars G. Rudstam, Orlando Sarnelle, Nancy J. Schuldt, Catherine Scott, Nicholas K. Skaff, Nicole J. Smith, Nick R. Spinelli, Joseph Stachelek, Emily H. Stanley, John L. Stoddard, Scott B. Stopyak, Craig A. Stow, Jason Tallant, Pang‐Ning Tan, Anthony P. Thorpe, Michael J. Vanni, Tyler Wagner, Gretchen Watkins, Kathleen C. Weathers, Katherine E. Webster, Jeffrey D. White, Marcy K. Wilmes, Shuai Yuan
Software Mentions: 5
Published: about 7 years ago

10.3390/molecules25020359

Correlations Between Trace Elements in Selected Locations of the Human Brain in Individuals with Alcohol Use Disorder
Cited by: 7
Author(s): Cezary Grochowski, Magdalena Szukała, Jakub Litak, Agnieszka Budny, Jędrzej Proch, Dariusz Majerek, Eliza Blicharska, Przemysław Niedzielski
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12891-017-1791-y

Co-expression of 1α-hydroxylase and vitamin D receptor in human articular chondrocytes
Cited by: 10
Author(s): Ann Kristin Hansen, Yngve Figenschau, Inigo Zubiaurre-Martinez
Software Mentions: 3
Published: about 7 years ago

10.1093/iob/obab020

Differences in Mate Pairings of Hatchery- and Natural-Origin Coho Salmon Inferred from Offspring Genotypes
Cited by: 2
Author(s): Heather L. Auld, David P. Jacobson, Adelaide Rhodes, Michael Banks
Software Mentions: 2
Published: almost 4 years ago

10.3389/fmicb.2021.700698

Temporal, Spatial, and Genomic Analyses of Enterobacteriaceae Clinical Antimicrobial Resistance in Companion Animals Reveals Phenotypes and Genotypes of One Health Concern
Cited by: 6
Author(s): David A. Singleton, Pisut Pongchaikul, Shirley Smith, Rebecca J. Bengtsson, Kate S. Baker, Dorina Timofte, Stephen Steen, Matthew Jones, Larry Roberts, Fernando Sánchez‐Vizcaíno, Susan Dawson, P. J. W. Noble, Alan Radford, Gina Pinchbeck, Nicola Williams
Software Mentions: 2
Published: over 3 years ago

Projects: cran: purrr

Papers Mentioning purrr 50