Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-020-02233-7

https://doi.org/10.1186/s13059-020-02233-7

tidybulk: an R tidy framework for modular transcriptomic data analysis

Cited by: 22
Author(s): Stefano Mangiola, Ramyar Molania, Ruining Dong, Maria A. Doyle, Anthony T. Papenfuss
Published: almost 4 years ago

Software Mentions 13

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: ggbio
Visualization tools for genomic data
Papers that mentioned: 53
bioconductor: plyranges
A fluent interface for manipulating GenomicRanges
Papers that mentioned: 8
bioconductor: SummarizedExperiment
SummarizedExperiment container
Papers that mentioned: 52
bioconductor: tidybulk
Brings transcriptomics to the tidyverse
Papers that mentioned: 2
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: magrittr
A Forward-Pipe Operator for R
Papers that mentioned: 107
cran: purrr
Functional Programming Tools
Papers that mentioned: 50
cran: tidyHeatmap
A Tidy Implementation of Heatmap
Papers that mentioned: 2
cran: tidyr
Tidy Messy Data
Papers that mentioned: 321
cran: tidyverse
Easily Install and Load the 'Tidyverse'
Papers that mentioned: 1,023
pypi: ggplot
ggplot for python
Papers that mentioned: 796