Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: plyranges

https://packages.ecosyste.ms/registries/bioconductor.org/packages/plyranges

A fluent interface for manipulating GenomicRanges
1 version
Latest release: about 1 year ago
17 dependent packages
60,550 downloads total

Papers Mentioning plyranges 8

10.12688/f1000research.22259.1

Fluent genomics with plyranges and tximeta
Cited by: 2
Author(s): Stuart Lee, Michael C. Lawrence, Michael I. Love
Software Mentions: 35
Published: almost 5 years ago

10.1371/journal.pcbi.1007664

Tximeta: Reference sequence checksums for provenance identification in RNA-seq
Cited by: 122
Author(s): Michael I. Love, Charlotte Soneson, Peter Hickey, Lisa K. Johnson, Nicholas Pierce, Lori Shepherd, Martin Morgan, Rob Patro
Software Mentions: 19
Published: almost 5 years ago

10.3390/ijms22062790

Differential Methylation in the GSTT1 Regulatory Region in Sudden Unexplained Death and Sudden Unexpected Death in Epilepsy
Cited by: 4
Author(s): Steffan Noe Christiansen, Stine Jacobsen, Jeppe Dyrberg Andersen, Marie-Louise Kampmann, Linea C Trudsø, Karsten Olsen, Jacob Tfelt-Hansen, Jytte Banner, Niels Morling
Software Mentions: 13
Published: almost 4 years ago

10.1186/s13059-020-02233-7

tidybulk: an R tidy framework for modular transcriptomic data analysis
Cited by: 22
Author(s): Stefano Mangiola, Ramyar Molania, Ruining Dong, Maria A. Doyle, Anthony T. Papenfuss
Software Mentions: 13
Published: almost 4 years ago

10.1099/mgen.0.000524

BSGatlas: a unified Bacillus subtilis genome and transcriptome annotation atlas with enhanced information access
Cited by: 12
Author(s): Adrian Sven Geissler, Christian Anthon, Ferhat Alkan, Enrique González-Tortuero, Line Dahl Poulsen, Thomas Beuchert Kallehauge, Anne Breüner, Stefan E. Seemann, Jeppe Vinther, Jan Gorodkin
Software Mentions: 12
Published: almost 4 years ago

10.1093/molbev/msaa218

Few Fixed Variants between Trophic Specialist Pupfish Species Reveal Candidate<i>Cis</i>-Regulatory Alleles Underlying Rapid Craniofacial Divergence
Cited by: 16
Author(s): Joseph A. McGirr, Christopher H. Martin
Software Mentions: 10
Published: over 4 years ago

10.1186/s13059-018-1597-8

plyranges: a grammar of genomic data transformation
Cited by: 62
Author(s): Stuart Lee, Dianne Cook, Michael C. Lawrence
Software Mentions: 9
Published: almost 6 years ago

10.1186/s12915-018-0608-2

Migration through a small pore disrupts inactive chromatin organization in neutrophil-like cells
Cited by: 35
Author(s): Elsie C. Jacobson, Jo K. Perry, David S. Long, Ada L. Olins, Bryon E. Wright, Mark H. Vickers, Justin M. O’Sullivan
Software Mentions: 6
Published: about 6 years ago