Data

Tools

Indexes

Applications

Experiments

Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1093/molbev/msaa218

https://doi.org/10.1093/molbev/msaa218

Few Fixed Variants between Trophic Specialist Pupfish Species Reveal Candidate<i>Cis</i>-Regulatory Alleles Underlying Rapid Craniofacial Divergence

Cited by: 16
Author(s): Joseph A. McGirr, Christopher H. Martin
Published: almost 5 years ago

Software Mentions 10

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
Very Likely Science (100)
bioconductor: MBASED
Package containing functions for ASE analysis using Meta-analysis Based Allele-Specific Expression Detection
Papers that mentioned: 18
Very Likely Science (100)
bioconductor: plyranges
A fluent interface for manipulating GenomicRanges
Papers that mentioned: 8
Very Likely Science (100)
bioconductor: Rsubread
Mapping, quantification and variant analysis of sequencing data
Papers that mentioned: 331
Very Likely Science (100)
cran: fasta
Fast Adaptive Shrinkage/Thresholding Algorithm
Papers that mentioned: 848
Very Likely Science (60)
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
Very Likely Science (100)
cran: WASP
Wavelet System Prediction
Papers that mentioned: 97
Very Likely Science (100)
pypi: fasta
The fasta python package enables you to deal with biological sequence files easily.
Papers that mentioned: 848
Very Likely Science (80)
pypi: py
library with cross-python path, ini-parsing, io, code, log facilities
Papers that mentioned: 403
Very Likely Science (65)
pypi: RSeQC
RNA-seq QC Package
Papers that mentioned: 366
Very Likely Science (80)