cran: WASP | Projects | Ecosyste.ms: Papers

10.1093/molbev/msaa218

Few Fixed Variants between Trophic Specialist Pupfish Species Reveal CandidateCis-Regulatory Alleles Underlying Rapid Craniofacial Divergence
Cited by: 16
Author(s): Joseph A. McGirr, Christopher H. Martin
Software Mentions: 10
Published: over 4 years ago

10.1371/journal.pgen.1009531

Glucocorticoid signaling in pancreatic islets modulates gene regulatory programs and genetic risk of type 2 diabetes
Cited by: 12
Author(s): Anthony Aylward, Mei-Lin Okino, Paola Benaglio, Joshua Chiou, Elisha Beebe, José Padilla, Sharlene Diep, Kyle J. Gaulton
Software Mentions: 10
Published: over 3 years ago

10.7554/eLife.55862

Genomic architecture and evolutionary antagonism drive allelic expression bias in the social supergene of red fire ants
Cited by: 16
Author(s): Carlos Martínez-Ruiz, Rodrigo Pracana, Eckart Stolle, Carolina Ivon Paris, Richard A. Nichols, Yannick Wurm
Software Mentions: 9
Published: over 4 years ago

10.1186/s13059-021-02407-x

Optimizing expression quantitative trait locus mapping workflows for single-cell studies
Cited by: 30
Author(s): Anna Cuomo, Giordano Alvari, Christina B. Azodi, Davis J. McCarthy, Marc Jan Bonder
Software Mentions: 9
Published: over 3 years ago

10.1186/s13059-019-1855-4

Common DNA sequence variation influences 3-dimensional conformation of the human genome
Cited by: 66
Author(s): David U. Gorkin, Yunjiang Qiu, Ming Hu, Kipper Fletez-Brant, Tristin Liu, Anthony Schmitt, Amina Noor, Joshua Chiou, Kyle J. Gaulton, Jonathan Sebat, Yun Li, Kasper D. Hansen, Bing Ren
Software Mentions: 8
Published: about 5 years ago

10.1186/s13059-016-1043-8

Topoisomerase II beta interacts with cohesin and CTCF at topological domain borders
Cited by: 184
Author(s): Liis Uusküla-Reimand, Huayun Hou, Payman Samavarchi-Tehrani, Matteo Vietri Rudan, Minggao Liang, Alejandra Medina-Rivera, Hisham Mohammed, Dominic Schmidt, Petra Schwalie, Edwin J. Young, Jüri Reimand, Suzana Hadjur, Anne‐Claude Gingras, Michael D. Wilson
Software Mentions: 8
Published: over 8 years ago

10.1186/s12864-018-4835-2

Development and application of an integrated allele-specific pipeline for methylomic and epigenomic analysis (MEA)
Cited by: 15
Author(s): Julien Richard Albert, Takao Koike, Hamid Younesy, Iain Thompson, Aaron B. Bogutz, Mehdi Karimi, Matthew C. Lorincz
Software Mentions: 7
Published: over 6 years ago

10.7554/eLife.31977

Integration of human pancreatic islet genomic data refines regulatory mechanisms at Type 2 Diabetes susceptibility loci
Cited by: 101
Author(s): Matthias Thurner, Martijn van de Bunt, Jason Torres, Anubha Mahajan, Vibe Nylander, Amanda J. Bennett, Kyle J. Gaulton, Amy Barrett, Carla Burrows, Christopher G. Bell, Robert Lowe, Stephan Beck, Vardhman K. Rakyan, Anna L. Gloyn, Mark I. McCarthy
Software Mentions: 7
Published: almost 7 years ago

10.1186/s12864-021-07469-6

WASP: a versatile, web-accessible single cell RNA-Seq processing platform
Cited by: 5
Author(s): Andreas Hoek, Katharina Maibach, Ebru Özmen, Ana Ivonne Vazquez‐Armendariz, Jan Philipp Mengel, Torsten Hain, Susanne Herold, Alexander Goesmann
Software Mentions: 6
Published: almost 4 years ago

10.7554/eLife.57345

Dynamic effects of genetic variation on gene expression revealed following hypoxic stress in cardiomyocytes
Cited by: 37
Author(s): Michelle C. Ward, Nicholas E. Banovich, Abhishek Sarkar, Matthew Stephens, Yoav Gilad
Software Mentions: 6
Published: almost 4 years ago

10.1371/journal.pgen.1006750

TCF21 and the environmental sensor aryl-hydrocarbon receptor cooperate to activate a pro-inflammatory gene expression program in coronary artery smooth muscle cells
Cited by: 50
Author(s): Juyong Brian Kim, Milos Pjanic, Trieu Nguyen, Clint L. Miller, Dharini Iyer, Boxiang Liu, Ting Wang, Olga V. Sazonova, Iván Cárcamo-Orive, Ljubica Matic, Lars Maegdefessel, Ulf Hedin, Thomas Quertermous
Software Mentions: 6
Published: over 7 years ago

10.1186/s13059-019-1840-y

Genetic regulation of gene expression and splicing during a 10-year period of human aging
Cited by: 38
Author(s): Brunilda Balliu, Matthew G. Durrant, Olivia de Goede, Nathan S. Abell, Li X, Boxiang Liu, Michael J. Gloudemans, Naomi L. Cook, Kevin S. Smith, David A. Knowles, Mauro Pala, Francesco Cucca, David Schlessinger, Siddhartha Jaiswal, Chiara Sabatti, Lars Lind, Erik Ingelsson, Stephen B. Montgomery
Software Mentions: 5
Published: about 5 years ago

10.1186/s13059-021-02334-x

The impact of cell type and context-dependent regulatory variants on human immune traits
Cited by: 27
Author(s): Zepeng Mu, Wei Wei, Benjamin Jung Fair, Jinlin Miao, Ping Zhu, Yang Li
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pgen.1007631

Spatially varying cis-regulatory divergence in Drosophila embryos elucidates cis-regulatory logic
Cited by: 16
Author(s): Peter A. Combs, Hunter B. Fraser
Software Mentions: 5
Published: about 6 years ago

10.1371/journal.pgen.1007661

Balancing selection on a recessive lethal deletion with pleiotropic effects on two neighboring genes in the porcine genome
Cited by: 29
Author(s): Martijn F.L. Derks, Marcos S. Lopes, Mirte Bosse, Ole Madsen, Bert Dibbits, B. Harlizius, M.A.M. Groenen, Hendrik Jan Megens
Software Mentions: 5
Published: over 6 years ago

10.3389/fgene.2016.00075

Integrated Systems for NGS Data Management and Analysis: Open Issues and Available Solutions
Cited by: 35
Author(s): Valerio Bianchi, Arnaud Céol, Alessandro G. E. Ogier, Stefano de Pretis, Eugenia Galeota, Kamal Kishore, Pranami Bora, Ottavio Croci, Stefano Campaner, Bruno Amati, Marco J. Morelli, Mattia Pelizzola
Software Mentions: 4
Published: over 8 years ago

10.12688/f1000research.9037.2

SNPsplit: Allele-specific splitting of alignments between genomes with known SNP genotypes
Cited by: 74
Author(s): Felix Krueger, Simon Andrews
Software Mentions: 4
Published: over 8 years ago

10.3390/s20123604

Towards a Secure Thermal-Energy Aware Routing Protocol in Wireless Body Area Network Based on Blockchain Technology
Cited by: 60
Author(s): Zeinab Shahbazi, Yung-Cheol Byun
Software Mentions: 4
Published: over 4 years ago

10.1534/g3.119.400294

Open Chromatin Profiling in Adipose Tissue Marks Genomic Regions with Functional Roles in Cardiometabolic Traits
Cited by: 18
Author(s): Maren E. Cannon, Kevin W. Currin, Kristin L. Young, Hannah J. Perrin, Swarooparani Vadlamudi, Alexias Safi, Lingyun Song, Ying Wu, Martin Wabitsch, Markku Laakso, Gregory E. Crawford, Karen L. Mohlke
Software Mentions: 4
Published: over 5 years ago

10.1186/s13072-015-0040-6

RNA:DNA hybrids in the human genome have distinctive nucleotide characteristics, chromatin composition, and transcriptional relationships
Cited by: 127
Author(s): Julie Nadel, Rodoniki Athanasiadou, Christophe Lemetre, N. Ari Wijetunga, Pilib Ó Broin, Hanae Sato, Zhengdong Zhang, Jeffrey A. Jeddeloh, Cristina Montagna, Aaron Golden, Cathal Seoighe, John M. Greally
Software Mentions: 4
Published: about 9 years ago

10.1186/s12864-017-3563-3

Transcriptomic dynamics of breast cancer progression in the MMTV-PyMT mouse model
Cited by: 30
Author(s): Ying Cai, Rubén Nogales-Cadenas, Quanwei Zhang, Jhih Rong Lin, Wen Zhang, Kelly O’Brien, Cristina Montagna, Zhengdong D. Zhang
Software Mentions: 4
Published: almost 8 years ago

10.7554/eLife.22536

Transcriptional networks specifying homeostatic and inflammatory programs of gene expression in human aortic endothelial cells
Cited by: 68
Author(s): Nicholas T Hogan, Michael B. Whalen, Lindsey K Stolze, Nizar K Hadeli, Michael T. Lam, James R. Springstead, Christopher K. Glass, Casey E. Romanoski
Software Mentions: 4
Published: over 7 years ago

10.3390/genes11030240

Estimating the Allele-Specific Expression of SNVs From 10× Genomics Single-Cell RNA-Sequencing Data
Cited by: 11
Author(s): N M Prashant, Hongyu Liu, Pavlos Bousounis, Liam F. Spurr, Nawaf Alomran, Helen Ibeawuchi, Justin Sein, Dacian Reece-Stremtan, Anélia Horvath
Software Mentions: 3
Published: almost 5 years ago

10.1186/s13059-019-1813-1

IMAGE: high-powered detection of genetic effects on DNA methylation using integrated methylation QTL mapping and allele-specific analysis
Cited by: 12
Author(s): Yue Fan, Tauras P. Vilgalys, Shuang Sun, Qinke Peng, Jenny Tung, Xiang Zhou
Software Mentions: 3
Published: about 5 years ago

10.1093/gbe/evaa132

Bumblebee Workers Show Differences in Allele-Specific DNA Methylation and Allele-Specific Expression
Cited by: 11
Author(s): Hollie Marshall, Alun R. C. Jones, Zoë N. Lonsdale, Eamonn B. Mallon
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pgen.1008229

Analysis of genetically driven alternative splicing identifies FBXO38 as a novel COPD susceptibility gene
Cited by: 16
Author(s): Aabida Saferali, Jeong H. Yun, Margaret M. Parker, Phuwanat Sakornsakolpat, Robert Chase, Andrew Lamb, Brian D. Hobbs, Marike Boezen, Xiangpeng Dai, Kim de Jong, Terri H. Beaty, Wenyi Wei, Xiaobo Zhou, Edwin K. Silverman, Michael H. Cho, Peter J. Castaldi, Craig P. Hersh
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0203906

Parent of origin gene expression in a founder population identifies two new candidate imprinted genes at known imprinted regions
Cited by: 8
Author(s): Sahar V. Mozaffari, Michelle M. Stein, Kevin M. Magnaye, Dan L. Nicolae, Carole Ober
Software Mentions: 3
Published: over 6 years ago

10.1093/bib/bbw101

A bioimage informatics platform for high-throughput embryo phenotyping
Cited by: 9
Author(s): James M. Brown, Neil R. Horner, Thomas N. Lawson, Tanja Fiegel, Simon Greenaway, Hugh W. Morgan, Natalie Ring, Luís Santos, Duncan Sneddon, Lydia Teboul, Jennifer Vibert, Gagarine Yaikhom, Henrik Westerberg, Ann‐Marie Mallon
Software Mentions: 3
Published: about 8 years ago

10.1186/s12915-019-0674-0

RNA-Seq in 296 phased trios provides a high-resolution map of genomic imprinting
Cited by: 24
Author(s): Bharati Jadhav, Ramin Monajemi, Kristina K. Gagalova, Daniel J. Ho, Harmen H.M. Draisma, Mark A. van de Wiel, Lude Franke, Bastiaan T. Heijmans, Joyce B. J. van Meurs, Rick Jansen, Peter A.C. ’t Hoen, Andrew J. Sharp, Szymon M. Kiełbasa
Software Mentions: 3
Published: over 5 years ago

10.1007/s10664-019-09707-8

Search-based multi-vulnerability testing of XML injections in web applications
Cited by: 10
Author(s): Sadeeq Jan, Annibale Panichella, Andrea Arcuri, Lionel C. Briand
Software Mentions: 3
Published: over 5 years ago

10.1128/mSystems.00067-16

Genetic and Transcriptional Analysis of Human Host Response to Healthy Gut Microbiota
Cited by: 31
Author(s): Allison L. Richards, Michael B. Burns, Adnan Alazizi, Luis B. Barreiro, Roger Piqué-Regi, Ran Blekhman, Francesca Luca
Software Mentions: 3
Published: over 8 years ago

10.1186/s13072-015-0004-x

DNA demethylation by 5-aza-2′-deoxycytidine is imprinted, targeted to euchromatin, and has limited transcriptional consequences
Cited by: 37
Author(s): María Paz Ramos, N. Ari Wijetunga, Andrew McLellan, Masako Suzuki, John M. Greally
Software Mentions: 3
Published: almost 10 years ago

10.1007/s10686-018-9611-4

Exoplanet spectroscopy and photometry with the Twinkle space telescope
Cited by: 41
Author(s): Billy Edwards, Malena Rice, Tiziano Zingalès, Marcell Tessenyi, I. P. Waldmann, Giovanna Tinetti, Enzo Pascale, G. Savini, Subhajit Sarkar
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pgen.1008786

ASEP: Gene-based detection of allele-specific expression across individuals in a population by RNA sequencing
Cited by: 37
Author(s): Jiaxin Fan, Jian Hu, Chenyi Xue, Hanrui Zhang, Katalin Suszták, Muredach P Reilly, Rui Xiao, Mingyao Li
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0235355

Influence of Funneliformis mosseae enhanced with titanium dioxide nanoparticles (TiO2NPs) on Phaseolus vulgaris L. under salinity stress
Cited by: 30
Author(s): Nashwa El‐Gazzar, Khalid S. Almaary, Ahmed Mahmoud Ismail, G. Polizzi
Software Mentions: 2
Published: over 4 years ago

10.3389/fgene.2019.01080

A Mini-Atlas of Gene Expression for the Domestic Goat (Capra hircus)
Cited by: 11
Author(s): Charity Muriuki, Stephen J. Bush, Mazdak Salavati, Mary E. B. McCulloch, Zofia M. Lisowski, Morris Agaba, Appolinaire Djikeng, David Hume, Emily L. Clark
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pgen.1009080

Detecting cell-type-specific allelic expression imbalance by integrative analysis of bulk and single-cell RNA sequencing data
Cited by: 13
Author(s): Jiaxin Fan, Xuran Wang, Rui Xiao, Mingyao Li
Software Mentions: 2
Published: almost 4 years ago

10.3390/ijerph120606352

SaDA: From Sampling to Data Analysis—An Extensible Open Source Infrastructure for Rapid, Robust and Automated Management and Analysis of Modern Ecological High-Throughput Microarray Data
Cited by: 7
Author(s): Kumar Saurabh Singh, Dominique Thual, Roberto Spurio, Nicola Cannata
Software Mentions: 2
Published: over 9 years ago

10.3390/s100908504

Sensor Networks in the Low Lands
Cited by: 9
Author(s): Nirvana Meratnia, Berend Jan van der Zwaag, Hylke W. van Dijk, Dennis Bijwaard, Paul J.M. Havinga
Software Mentions: 2
Published: over 14 years ago

10.1093/bioinformatics/btz750

ReQTL: identifying correlations between expressed SNVs and gene expression using RNA-sequencing data
Cited by: 11
Author(s): Liam F. Spurr, Nawaf Alomran, Pavlos Bousounis, Dacian Reece-Stremtan, N M Prashant, Hongyu Liu, Piotr Słowiński, Muzi Li, Qianqian Zhang, Justin Sein, Gabriel Asher, Keith A. Crandall, Krasimira Tsaneva-Atanasova, Anélia Horvath
Software Mentions: 2
Published: about 5 years ago

10.1186/s13059-020-02122-z

A vast resource of allelic expression data spanning human tissues
Cited by: 59
Author(s): Stephane E. Castel, François Aguet, Pejman Mohammadi, François Aguet, Shankara Anand, Kristin Ardlie, Stacey Gabriel, Gad Getz, Aaron Graubert, Kane Hadley, Robert E. Handsaker, Katherine Huang, Seva Kashin, Li Xiao, Daniel G. MacArthur, Samuel R. Meier, Jared L. Nedzel, Duyen Thi My Nguyen, Ayellet V. Segrè, Ellen Todres, François Aguet, Shankara Anand, Kristin Ardlie, Brunilda Balliu, Alvaro N. Barbeira, Alexis Battle, Rodrigo Bonazzola, Andrew A. Brown, Christopher D. Brown, Stephane E. Castel, Donald F. Conrad, Daniel Cotter, Nancy J. Cox, Das S, Olivia M. de Goede, Emmanouil T. Dermitzakis, Jonah Einson, Barbara E. Engelhardt, Eleazar Eskin, Tiffany Eulalio, Nicole M. Ferraro, Elise Flynn, Laure Frésard, Eric R. Gamazon, Diego Garrido-Martín, Nicole R. Gay, Gad Getz, Michael J. Gloudemans, Aaron Graubert, Roderic Guigó, Kane Hadley, Andrew R. Hame, Robert E. Handsaker, Yuan He, Paul Hoffman, Farhad Hormozdiari, Lei Hou, Katherine Huang, Hae Kyung Im, Brian Jo, Silva Kasela, Seva Kashin, M Kellis, Sarah Kim-Hellmuth, Alan Kwong, Tuuli Lappalainen, Li Xiao, Xin Li, Yanyu Liang, Daniel G. MacArthur, Serghei Mangul, Samuel R. Meier, Pejman Mohammadi, S Montgomery, Manuel Muñoz-Aguirre, Daniel Nachun, Jared L. Nedzel, Duyen Thi My Nguyen, Andrew B. Nobel, Meritxell Oliva, Yo Son Park, Yong‐Jin Park, Princy Parsana, Abhiram Rao, Ferrán Reverter, John M. Rouhana, Chiara Sabatti, Ashis Saha, Ayellet V. Segrè, Andrew D. Skol, Matthew Stephens, Barbara Elaine Stranger, Benjamin J. Strober, Nicole A. Teran, Ellen Todres, Ana Viñuela, Gao Wang, Xiaoquan Wen, Fred A. Wright, Valentin Wucher, Yuxin Zou, Pedro G. Ferreira, Gen Li, Marta Melé, Esti Yeger‐Lotem, Mary E. Barcus, Debra Bradbury, Tanya Krubit, Jeffrey A. McLean, Liqun Qi, Karna Robinson, Nancy Roche, Anna Smith, Leslie H. Sobin, David E. Tabor, Anita H. Undale, Jason Bridge, Lori E. Brigham, Barbara A. Foster, Bryan M. Gillard, Richard Hasz, Marcus Hunter, Christopher Johns, Mark R. Johnson, Ellen Karasik, Gene C. Kopen, William F. Leinweber, Alisa McDonald, Michael T. Moser, Kevin Myer, Kimberley Ramsey, Brian Roe, Saboor Shad, Jeffrey A. Thomas, Gary Walters, Michael A Washington, J. Gary Wheeler, Scott D. Jewell, Daniel C. Rohrer, Dana R. Valley, Davis Da, Deborah C. Mash, Mary E. Barcus, Philip A. Branton, Leslie H. Sobin, Laura Barker, Heather Gardiner, Maghboeba Mosavel, Laura A. Siminoff, Paul Flicek, Maximilian Haeussler, Thomas Juettemann, W. James Kent, Christopher M. Lee, Conner C Powell, Kate R. Rosenbloom, Magali Ruffier, Dan Sheppard, Kieron Taylor, Stephen J. Trevanion, Daniel R. Zerbino, Nathan S. Abell, Joshua M. Akey, Lin Chen, Kathryn Demanelis, Jennifer A. Doherty, Andrew P. Feinberg, Kasper D. Hansen, Peter Hickey, Lei Hou, Farzana Jasmine, Lihua Jiang, Rajinder Kaul, M Kellis, Muhammad G. Kibriya, Jin Billy Li, Qin Li, Shin Lin, Sandra Linder, S Montgomery, Meritxell Oliva, Yong‐Jin Park, Brandon L. Pierce, Lindsay F. Rizzardi, Andrew D. Skol, Kevin S. Smith, M Snyder, J Stamatoyannopoulos, Barbara Elaine Stranger, Hua Tang, Meng Wang, Philip A. Branton, Latarsha J. Carithers, Peng Guan, Susan E. Koester, A. Roger Little, Helen M. Moore, Concepcion R. Nierras, Abhi K. Rao, Jimmie B. Vaught, Simona Volpi, Kristin Ardlie, Tuuli Lappalainen
Software Mentions: 2
Published: over 4 years ago

10.1111/eva.12404

Loss of genetic diversity as a consequence of selection in response to high <scp>pCO</scp>2
Cited by: 17
Author(s): Melanie M. Lloyd, April D. Makukhov, Melissa H. Pespeni
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0036962

The Cumulative Effects of Polymorphisms in the DNA Mismatch Repair Genes and Tobacco Smoking in Oesophageal Cancer Risk
Cited by: 44
Author(s): Matjaž Vogelsang, Yabing Wang, Nika Veber, Lamech M. Mwapagha, M. Iqbal Parker
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pcbi.1005629

Quantification of transplant-derived circulating cell-free DNA in absence of a donor genotype
Cited by: 57
Author(s): Eilon Sharon, Sancun Hao, Sandhya Kharbanda, Winston Koh, Lance Martin, Kiran K. Khush, Hannah A. Valantine, Jonathan K. Pritchard, Iwijn De Vlaminck
Software Mentions: 2
Published: over 7 years ago

10.1155/2016/9174683

A Natural Language Interface Concordant with a Knowledge Base
Cited by: 4
Author(s): Yong‐Jin Han, Seong-Bae Park
Software Mentions: 2
Published: almost 9 years ago

10.3390/s140509153

Surveying Wearable Human Assistive Technology for Life and Safety Critical Applications: Standards, Challenges and Opportunities
Cited by: 157
Author(s): Muhammad Mahtab Alam, Elyes Ben Hamida
Software Mentions: 2
Published: over 10 years ago

10.7554/eLife.39595

Fine-mapping cis-regulatory variants in diverse human populations
Cited by: 47
Author(s): Ashley K. Tehranchi, Brian Hie, Michael Dacre, Irene M. Kaplow, Kade P Pettie, Peter A. Combs, Hunter B. Fraser
Software Mentions: 2
Published: almost 6 years ago

10.1186/s13059-015-0762-6

Tools and best practices for data processing in allelic expression analysis
Cited by: 290
Author(s): Stephane E. Castel, Ami Levy‐Moonshine, Pejman Mohammadi, Eric Banks, Tuuli Lappalainen
Software Mentions: 2
Published: over 9 years ago

10.1007/s13205-014-0198-9

Genotypic and phenotypic diversity of polyhydroxybutyrate (PHB) producing Pseudomonas putida isolates of Chhattisgarh region and assessment of its phosphate solubilizing ability
Cited by: 9
Author(s): Toshy Agrawal, Anil S. Kotasthane, Renu Kushwah
Software Mentions: 1
Published: almost 11 years ago

10.1016/j.jneumeth.2015.05.001

Low cost production of 3D-printed devices and electrostimulation chambers for the culture of primary neurons
Cited by: 14
Author(s): Joanna D. Wardyn, Chris Sanderson, Laura E. Swan, Massimiliano Stagi
Software Mentions: 1
Published: over 9 years ago

10.4269/ajtmh.16-0696

Using Rainfall and Temperature Data in the Evaluation of National Malaria Control Programs in Africa
Cited by: 36
Author(s): Madeleine C. Thomson, Israel Ukawuba, Christine L. Hershey, Adam Bennett, Pietro Ceccato, Bradfield Lyon, Tufa Dinku
Software Mentions: 1
Published: over 7 years ago

10.3390/antibiotics10070870

Antibacterial Peptides Produced by Alcalase from Cowpea Seed Proteins
Cited by: 16
Author(s): Ali Osman, Gamal Enan, Abdul-Raouf Al-Mohammadi, Seham Abdel-Shafi, Samar Abdel-Hameid, Mahmoud Sitohy, Nashwa El‐Gazzar
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2105-15-S14-S3

SMITH: a LIMS for handling next-generation sequencing workflows
Cited by: 16
Author(s): Francesco Venco, Yuriy Vaskin, Arnaud Céol, Heiko Müller
Software Mentions: 1
Published: about 10 years ago

10.1186/1471-2164-8-275

WASP: a Web-based Allele-Specific PCR assay designing tool for detecting SNPs and mutations
Cited by: 107
Author(s): Pongsakorn Wangkumhang, Kridsadakorn Chaichoompu, Chumpol Ngamphiw, Uttapong Ruangrit, Juntima Chanprasert, Anunchai Assawamakin, Sissades Tongsima
Software Mentions: 1
Published: over 17 years ago

10.1186/1472-6920-6-10

Development, implementation and pilot evaluation of a Web-based Virtual Patient Case Simulation environment – Web-SP
Cited by: 157
Author(s): Nabil Zary, Gunilla Johnson, J. Boberg, Uno Fors
Software Mentions: 1
Published: almost 19 years ago

10.1186/s12920-021-00873-7

Association of PICK1 and BDNF variations with increased risk of methamphetamine dependence among Iranian population: a case–control study
Cited by: 2
Author(s): Amir Tajbakhsh, Maliheh Alimardani, Mahla Asghari, Soheila Abedini, Sohrab Saghafi Khadem, Abolfazl Nesaei Bajestani, Forough Alipoor, Maryam Alidoust, Amir Savardashtaki, Peyman Hashemian, Alireza Pasdar
Software Mentions: 1
Published: almost 4 years ago

10.3390/ma13194311

Experimental and Numerical Study of the Thermo-Viscoplastic Behavior of NICRO 12.1 for Perforation Tests
Cited by: 0
Author(s): Eva Alonso-Elías, Alexis Rusinek, Ignacio Rubio-Díaz, Richard Bernier, M. Rodríguez-Millán, M.H. Miguélez
Software Mentions: 1
Published: over 4 years ago

10.3390/ma13010167

Material Characterization of PMC/TBC Composite Under High Strain Rates and Elevated Temperatures
Cited by: 7
Author(s): Przemysław Golewski, Alexis Rusinek, Tomasz Sadowski
Software Mentions: 1
Published: almost 5 years ago

10.3390/molecules25204822

Detection, Purification and Elucidation of Chemical Structure and Antiproliferative Activity of Taxol Produced by Penicillium chrysogenum
Cited by: 9
Author(s): Abdelrahman H. Elsayed, Gamal Enan, Abdul-Raouf Al-Mohammadi, A. H. Moustafa, Nashwa El‐Gazzar
Software Mentions: 1
Published: about 4 years ago

10.14202/vetworld.2016.1381-1385

Studies on alterations of clinical and hemato-biochemical parameters before and after treatment in calves naturally infected with theileriosis
Cited by: 3
Author(s): J. P. Kachhawa, Smita Kumar, Ankita Sharma, Ajaib Singh, Anil Ahuja
Software Mentions: 1
Published: about 8 years ago

10.3390/w12051398

WASP 8: The Next Generation in the 50-year Evolution of USEPA’s Water Quality Model
Cited by: 37
Author(s): Tim A. Wool, Robert B. Ambrose, James L. Martin, Alex Comer
Software Mentions: 1
Published: over 4 years ago

10.1186/1746-4811-8-34

An improved allele-specific PCR primer design method for SNP marker analysis and its application
Cited by: 184
Author(s): Jing Liu, Shunmou Huang, Min Sun, Liu S, Yumei Liu, Wanxing Wang, Xiurong Zhang, Hanzhong Wang, Wei Hua
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pcbi.1002696

Prediction and Dissection of Widely-Varying Association Rate Constants of Actin-Binding Proteins
Cited by: 11
Author(s): Xiaodong Pang, Kenneth H. Zhou, Sanbo Qin, Huan‐Xiang Zhou
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0055087

A Numerical Analysis Model for the Interpretation of In Vivo Platelet Consumption Data
Cited by: 3
Author(s): Ted S. Strom
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0223882

Modulation of brain tumor risk by genetic SNPs in PARP1gene: Hospital based case control study
Cited by: 5
Author(s): Asad Khan, Ishrat Mahjabeen, Muhammad Arif Malik, Maqbool Hussain, Sheraz Ahmad Khan, Mahmood Akhtar Kayani
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0152491

Estimating and Predicting Metal Concentration Using Online Turbidity Values and Water Quality Models in Two Rivers of the Taihu Basin, Eastern China
Cited by: 19
Author(s): Hong Yao, Wei Zhuang, Qian Yu, Bisheng Xia, Yang Yang, Xin Qian
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0250782

A feature fusion deep-projection convolution neural network for vehicle detection in aerial images
Cited by: 7
Author(s): Bin Wang, Bin Xu
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0133742

Development of a Targeted Multi-Disorder High-Throughput Sequencing Assay for the Effective Identification of Disease-Causing Variants
Cited by: 15
Author(s): Maria Delio, Kavisha Patel, Alex Maslov, Robert W. Marion, Thomas V. McDonald, Evan M. Cadoff, Aaron Golden, John M. Greally, Jan Vijg, Bernice E. Morrow, Cristina Montagna
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0199007

Interaction among susceptibility genotypes of PARP1 SNPs in thyroid carcinoma
Cited by: 10
Author(s): Kashif Bashir, Rizwana Sarwar, Soma Saeed, Ishrat Mahjabeen, Mahmood Akhtar Kayani
Software Mentions: 1
Published: over 6 years ago

10.1016/j.cmet.2021.01.001

A regulatory variant at 3q21.1 confers an increased pleiotropic risk for hyperglycemia and altered bone mineral density
Cited by: 22
Author(s): Nasa Sinnott-Armstrong, Isabel Sousa, Samantha Laber, Elizabeth Rendina-Ruedy, Simon N. Dankel, Teresa Ferreira, Gunnar Mellgren, David Karasik, Manuel A. Rivas, Jonathan K. Pritchard, Anyonya R. Guntur, Roger Cox, Cecilia M. Lindgren, Hans Hauner, Richard Sallari, Clifford J. Rosen, Yi‐Hsiang Hsu, Eric S. Lander, Douglas P. Kiel, Melina Claussnitzer
Software Mentions: 1
Published: almost 4 years ago

10.1016/j.cub.2019.10.036

WASP Restricts Active Rac to Maintain Cells’ Front-Rear Polarization
Cited by: 13
Author(s): Clelia Amato, Peter A. Thomason, Andrew J. Davidson, Karthic Swaminathan, Shehab Ismail, Laura M. Machesky, Robert H. Insall
Software Mentions: 1
Published: about 5 years ago

10.3390/e22050535

A Cross Entropy Based Deep Neural Network Model for Road Extraction from Satellite Images
Cited by: 16
Author(s): Bowei Shan, Yong Fang
Software Mentions: 1
Published: over 4 years ago

10.3389/fgene.2019.00863

Elimination of Reference Mapping Bias Reveals Robust Immune Related Allele-Specific Expression in Crossbred Sheep
Cited by: 15
Author(s): Mazdak Salavati, Stephen J. Bush, Sergio Palma-Vera, Mary E. B. McCulloch, David Hume, Emily L. Clark
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2019.00241

Population Pharmacogenomics for Precision Public Health in Colombia
Cited by: 29
Author(s): Shashwat Deepali Nagar, A. Melissa Moreno, Emily T. Norris, Lavanya Rishishwar, Andrew B. Conley, Kelly L. O’Neal, Sara Vélez-Gómez, Camila Montes-Rodríguez, Wendy V. Jaraba-Álvarez, Isaura Torres, Miguel A Medina-Rivas, Augusto Valderrama-Aguirre, I. King Jordan, Juan Esteban Gallo
Software Mentions: 1
Published: almost 6 years ago

10.3389/fimmu.2015.00047

Signal Integration during T Lymphocyte Activation and Function: Lessons from the Wiskottâ€“Aldrich Syndrome
Cited by: 23
Author(s): Vinı́cius Cotta-de-Almeida, Loı̈c Dupré, Delphine Guipouy, Zilton Vasconcelos
Software Mentions: 1
Published: almost 10 years ago

10.3389/fpls.2021.688694

MutMap Approach Enables Rapid Identification of Candidate Genes and Development of Markers Associated With Early Flowering and Enhanced Seed Size in Chickpea (Cicer arietinum L.)
Cited by: 6
Author(s): Praveen Kumar Manchikatla, Danamma Kalavikatte, Bingi Pujari Mallikarjuna, Palakurthi Ramesh, Aamir W. Khan, Uday Chand Jha, Prasad Bajaj, Prashant Singam, Annapurna Chitikineni, Rajeev K. Varshney, Mahendar Thudi
Software Mentions: 1
Published: over 3 years ago

10.1074/jbc.M115.669838

Metal Ion-dependent Heavy Chain Transfer Activity of TSG-6 Mediates Assembly of the Cumulus-Oocyte Matrix
Cited by: 42
Author(s): Deg Briggs, Holly L. Birchenough, Tariq Ali, Marilyn S. Rugg, Jonathan P. Waltho, Elena Ievoli, Thomas A. Jowitt, Jan J. Enghild, Ralf P. Richter, Antonietta Salustri, Caroline M. Milner, Anthony J. Day
Software Mentions: 1
Published: about 9 years ago

10.14440/jbm.2018.224

Development and validation of an allele-specific PCR assay for genotyping a promoter and exonic single nucleotide polymorphisms of MGMT gene
Cited by: 2
Author(s): Anuj Tyagi, Mary Boudal Khoshbeen, Patricia Huezo‐Diaz Curtis, Chakradhara Rao S. Uppugunduri, Marc Ansari
Software Mentions: 1
Published: over 6 years ago

10.1128/JCM.00777-21

Performance of Fully Automated Antimicrobial Disk Diffusion Susceptibility Testing Using Copan WASP Colibri Coupled to the Radian In-Line Carousel and Expert System
Cited by: 10
Author(s): Abdessalam Cherkaoui, Gesuèle Renzi, Nicolas Vuilleumier, Jacques Schrenzel
Software Mentions: 1
Published: over 3 years ago

10.3390/polym11111870

Hardware Factors Influencing Strength of Parts Obtained by Fused Filament Fabrication
Cited by: 17
Author(s): Kuznetsov Ve, Azamat G. Tavitov, Oleg D. Urzhumtsev, Mikhail V. Mikhalin, Alexander I Moiseev
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-017-13461-6

Haplotype analysis of XRCC2 gene polymorphisms and association with increased risk of head and neck cancer
Cited by: 9
Author(s): Soma Saeed, Ishrat Mahjabeen, Rizwana Sarwar, Kashif Bashir, Mahmood Akhtar Kayani
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-018-26634-8

Exploration of an urban lake management model to simulate chlorine interference based on the ecological relationships among aquatic species
Cited by: 7
Author(s): Zhiqiang Yan, Yafei Wang, Di Wu, Beicheng Xia
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-26925-0

Influence of the ordering of impurities on the appearance of an energy gap and on the electrical conductance of graphene
Cited by: 22
Author(s): S. P. Repetsky, I. G. Vyshyvana, S. P. Kruchinin, Stefano Bellucci
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-020-80851-8

WASP: a software package for correctly characterizing the topological development of ribbon structures
Cited by: 2
Author(s): Zachary Sierzega, Jeff Wereszczynski, Christopher Prior
Software Mentions: 1
Published: almost 4 years ago

10.3390/s140101322

A Survey of Routing Protocols in Wireless Body Sensor Networks
Cited by: 111
Author(s): Javed Iqbal Bangash, Abdul Hanan Abdullah, Mohammad Hossein Anisi, Abdul Rahim Khan
Software Mentions: 1
Published: almost 11 years ago

10.3390/s17040701

Prioritizing Seafloor Mapping for Washington’s Pacific Coast
Cited by: 2
Author(s): Timothy Adams Battista, Ken Buja, John D. Christensen, Jennifer Hennessey, Katrina Lassiter
Software Mentions: 1
Published: almost 8 years ago

10.3390/s17081915

Performance Analysis of ToA-Based Positioning Algorithms for Static and Dynamic Targets with Low Ranging Measurements
Cited by: 38
Author(s): André G. Ferreira, Duarte Fernandes, André P. Catarino, João L. Monteiro
Software Mentions: 1
Published: over 7 years ago

10.3390/s18103268

An Artificial Bee Colony-Based Green Routing Mechanism in WBANs for Sensor-Based E-Healthcare Systems
Cited by: 18
Author(s): Jiwang Yan, Yuhuai Peng, Dawei Shen, Xinxin Yan, Qingxu Deng
Software Mentions: 1
Published: over 6 years ago

10.3390/s19245361

Waterfall Atrous Spatial Pooling Architecture for Efficient Semantic Segmentation
Cited by: 31
Author(s): Bruno Artacho, Andreas Savakis
Software Mentions: 1
Published: about 5 years ago

10.3390/s21051570

Image Segmentation Using Encoder-Decoder with Deformable Convolutions
Cited by: 10
Author(s): Andreea Gurita, Irina Georgiana Mocanu
Software Mentions: 1
Published: almost 4 years ago

10.3390/s21092965

Adaptive Floor Cleaning Strategy by Human Density Surveillance Mapping with a Reconfigurable Multi-Purpose Service Robot
Cited by: 3
Author(s): Vinu Sivanantham, Anh Vu Le, Yuyao Shi, Mohan Rajesh Elara, B.J. Sheu
Software Mentions: 1
Published: over 3 years ago

10.1186/s40064-015-1437-1

Efficacy of sub lethal concentration of entomopathogenic fungi on the feeding and reproduction of Spodoptera litura
Cited by: 23
Author(s): Puthamohan Vinayaga Moorthi, C. Balasubramanian, S. Selvarani, A. Radha
Software Mentions: 1
Published: about 9 years ago

10.3390/ijerph110404108

Applying the Taguchi Method to River Water Pollution Remediation Strategy Optimization
Cited by: 3
Author(s): Tsung‐Ming Yang, Nien‐Sheng Hsu, Chih-Chiang Chiu, Hsin-Ju Wang
Software Mentions: 1
Published: over 10 years ago

10.3390/ijerph13040408

Modelling and Analysis of Hydrodynamics and Water Quality for Rivers in the Northern Cold Region of China
Cited by: 17
Author(s): Gong Li Tang, Yunqiang Zhu, Guozheng Wu, Jing Li, Zhao-Liang Li, Jiulin Sun
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.01008

Three-color single molecule imaging shows WASP detachment from Arp2/3 complex triggers actin filament branch formation
Cited by: 94
Author(s): Benjamin Smith, Shae B. Padrick, Lynda K. Doolittle, Karen Daugherty-Clarke, Ivan R. Corrêa, Min Xu, Bruce L. Goode, Michael K. Rosen, Jeff Gelles
Software Mentions: 1
Published: over 11 years ago

10.7554/eLife.50663

Lactate-mediated epigenetic reprogramming regulates formation of human pancreatic cancer-associated fibroblasts
Cited by: 93
Author(s): Tushar D. Bhagat, Dagny Von Ahrens, Meelad M. Dawlaty, Yiyu Zou, Joelle Baddour, Abhinav Achreja, Hongyun Zhao, Lifeng Yang, Brijesh Patel, Changsoo Kwak, Gaurav S. Choudhary, Shanisha Gordon-Mitchell, Srinivas Aluri, Sanchari Bhattacharyya, Srabani Sahu, Prafulla Bhagat, Yiting Yu, Matthias Bartenstein, Orsi Giricz, Masako Suzuki, Davendra Sohal, Sonal Gupta, Paola A. Guerrero, Surinder K. Batra, Michael Goggins, Ulrich Steidl, John M. Greally, Beamon Agarwal, Kith Pradhan, Debabrata Banerjee, Deepak Nagrath, Anirban Maitra, Amit Verma
Software Mentions: 1
Published: about 5 years ago

10.1186/s12984-019-0602-0

A novel wearable device to deliver unconstrained, unpredictable slip perturbations during gait
Cited by: 6
Author(s): Corbin M. Rasmussen, Nathaniel H. Hunt
Software Mentions: 1
Published: about 5 years ago

Projects: cran: WASP

Papers Mentioning WASP 97