Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-019-1855-4

https://doi.org/10.1186/s13059-019-1855-4

Cited by: 66
Author(s): David U. Gorkin, Yunjiang Qiu, Ming Hu, Kipper Fletez-Brant, Tristin Liu, Anthony Schmitt, Amina Noor, Joshua Chiou, Kyle J. Gaulton, Jonathan Sebat, Yun Li, Kasper D. Hansen, Bing Ren
Published: over 4 years ago

Software Mentions 8

bioconductor: bnbc

Bandwise normalization and batch correction of Hi-C data
Papers that mentioned: 1

bioconductor: limma

Linear Models for Microarray Data
Papers that mentioned: 7,776

cran: lmerTest

Tests in Linear Mixed Effects Models
Papers that mentioned: 1,865

cran: STAR

Spike Train Analysis with R
Papers that mentioned: 5,759

cran: WASP

Wavelet System Prediction
Papers that mentioned: 97

pypi: deepTools

Useful tools for exploring deep sequencing data.
Papers that mentioned: 435

pypi: gls

Gaussian Likelihood scoring method.
Papers that mentioned: 20

pypi: MACS2

Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203