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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1186/s13059-019-1855-4

https://doi.org/10.1186/s13059-019-1855-4

Common DNA sequence variation influences 3-dimensional conformation of the human genome

Cited by: 66
Author(s): David U. Gorkin, Yunjiang Qiu, Ming Hu, Kipper Fletez-Brant, Tristin Liu, Anthony Schmitt, Amina Noor, Joshua Chiou, Kyle J. Gaulton, Jonathan Sebat, Yun Li, Kasper D. Hansen, Bing Ren
Published: over 5 years ago

Software Mentions 8

bioconductor: bnbc
Bandwise normalization and batch correction of Hi-C data
Papers that mentioned: 1
Very Likely Science (100)
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
Very Likely Science (78)
cran: lmerTest
Tests in Linear Mixed Effects Models
Papers that mentioned: 1,865
Very Likely Science (100)
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
Very Likely Science (100)
cran: WASP
Wavelet System Prediction
Papers that mentioned: 97
Very Likely Science (100)
pypi: deepTools
Useful tools for exploring deep sequencing data.
Papers that mentioned: 435
Very Likely Science (90)
pypi: gls
Gaussian Likelihood scoring method.
Papers that mentioned: 20
Very Likely Science (65)
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
Very Likely Science (100)