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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1371/journal.pgen.1009531

https://doi.org/10.1371/journal.pgen.1009531

Glucocorticoid signaling in pancreatic islets modulates gene regulatory programs and genetic risk of type 2 diabetes

Cited by: 12
Author(s): Anthony Aylward, Mei-Lin Okino, Paola Benaglio, Joshua Chiou, Elisha Beebe, José Padilla, Sharlene Diep, Kyle J. Gaulton
Published: about 4 years ago

Software Mentions 10

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
Very Likely Science (100)
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
Very Likely Science (100)
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
Very Likely Science (78)
bioconductor: Rsubread
Mapping, quantification and variant analysis of sequencing data
Papers that mentioned: 331
Very Likely Science (100)
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
Very Likely Science (100)
cran: WASP
Wavelet System Prediction
Papers that mentioned: 97
Very Likely Science (100)
pypi: luciferase
Helper functions for luciferase data
Papers that mentioned: 3
Very Likely Science (85)
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
Very Likely Science (100)
pypi: PACE
Data Quality of Experimental Data
Papers that mentioned: 13,779
Very Likely Science (90)
pypi: tssenrich
Calculate TSS enrichment for ATAC-seq data
Papers that mentioned: 1
Very Likely Science (100)