Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.55862

https://doi.org/10.7554/eLife.55862

Cited by: 16
Author(s): Carlos Martínez-Ruiz, Rodrigo Pracana, Eckart Stolle, Carolina Ivon Paris, Richard A. Nichols, Yannick Wurm
Published: almost 4 years ago

Software Mentions 9

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: GenomicFeatures
Conveniently import and query gene models
Papers that mentioned: 141
bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
bioconductor: VariantAnnotation
Annotation of Genetic Variants
Papers that mentioned: 47
cran: lme4
Linear Mixed-Effects Models using 'Eigen' and S4
Papers that mentioned: 9,267
cran: lmerTest
Tests in Linear Mixed Effects Models
Papers that mentioned: 1,865
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
cran: WASP
Wavelet System Prediction
Papers that mentioned: 97
pypi: RSeQC
RNA-seq QC Package
Papers that mentioned: 366