Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-018-1597-8

https://doi.org/10.1186/s13059-018-1597-8

plyranges: a grammar of genomic data transformation

Cited by: 62
Author(s): Stuart Lee, Dianne Cook, Michael C. Lawrence
Published: almost 6 years ago

Software Mentions 9

bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
bioconductor: IRanges
Foundation of integer range manipulation in Bioconductor
Papers that mentioned: 62
bioconductor: plyranges
A fluent interface for manipulating GenomicRanges
Papers that mentioned: 8
bioconductor: rtracklayer
R interface to genome annotation files and the UCSC genome browser
Papers that mentioned: 107
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: magrittr
A Forward-Pipe Operator for R
Papers that mentioned: 107
cran: rlang
Functions for Base Types and Core R and 'Tidyverse' Features
Papers that mentioned: 16
cran: valr
Genome Interval Arithmetic
Papers that mentioned: 4
pypi: pybedtools
Wrapper around BEDTools for bioinformatics work
Papers that mentioned: 48