Ecosyste.ms: Papers

10.12688/f1000research.17824.2

Enhancing gene set enrichment using networks
Cited by: 2
Author(s): Michael Prummer
Software Mentions: 51
Published: over 5 years ago

10.12688/f1000research.22259.1

Fluent genomics with plyranges and tximeta
Cited by: 2
Author(s): Stuart Lee, Michael C. Lawrence, Michael I. Love
Software Mentions: 35
Published: almost 5 years ago

10.7554/eLife.61812

Reproducible analysis of disease space via principal components using the novel R package syndRomics
Cited by: 18
Author(s): Abel Torres-Espín, Austin Chou, J. Russell Huie, Nikos Kyritsis, Pavan S. Upadhyayula, Adam R. Ferguson
Software Mentions: 16
Published: almost 4 years ago

10.21105/joss.03073

mikropml: User-Friendly R Package for Supervised Machine Learning Pipelines
Cited by: 22
Author(s): Begüm D. Topçuoğlu, Zena Lapp, Kelly L Sovacool, Evan S. Snitkin, Jenna Wiens, Patrick D. Schloss
Software Mentions: 15
Published: over 3 years ago

10.1371/journal.pone.0223542

Joint emulation of Earth System Model temperature-precipitation realizations with internal variability and space-time and cross-variable correlation: fldgen v2.0 software description
Cited by: 3
Author(s): Abigail Snyder, Robert Link, Kalyn Dorheim, Ben Kravitz, Ben Bond‐Lamberty, Corinne Hartin
Software Mentions: 14
Published: about 5 years ago

10.1038/s41398-021-01596-0

Autoantibody profiles associated with clinical features in psychotic disorders
Cited by: 6
Author(s): August Jernbom Falk, Cherrie Galletly, David R. Just, Catherine Toben, Bernhard T. Baune, Scott Clark, Dennis Liu, Peter Nilsson, Anna Månberg, Klaus Oliver Schubert
Software Mentions: 13
Published: over 3 years ago

10.3389/fmicb.2020.02028

Assessment of Inter-Laboratory Variation in the Characterization and Analysis of the Mucosal Microbiota in Crohn’s Disease and Ulcerative Colitis
Cited by: 8
Author(s): Jake C. Szamosi, Jessica D. Forbes, John W. Copeland, Natalie Knox, Shahrokh Shekarriz, Laura Rossi, Morag Graham, Christine Bonner, David S. Guttman, Gary Van Domselaar, Michael G. Surette, Çharles N. Bernstein
Software Mentions: 13
Published: over 4 years ago

10.1093/aobpla/plz054

tealeaves: an R package for modelling leaf temperature using energy budgets
Cited by: 26
Author(s): Christopher D. Muir
Software Mentions: 12
Published: about 5 years ago

10.3389/fnut.2021.642612

The Association of Meat Intake With All-Cause Mortality and Acute Myocardial Infarction Is Age-Dependent in Patients With Stable Angina Pectoris
Cited by: 2
Author(s): Åslaug Oddsdatter Matre, Anthea Van Parys, Trond E. Olsen, Teresa Haugsgjerd, Carl Michael Baravelli, Ottar Nygård, Jutta Dierkes, Vegard Lysne
Software Mentions: 12
Published: almost 4 years ago

10.1534/g3.120.401527

rdmc: An Open Source R Package Implementing Convergent Adaptation Models of Lee and Coop (2017)
Cited by: 2
Author(s): Silas Tittes
Software Mentions: 12
Published: over 4 years ago

10.3389/fnut.2021.676026

Food Sources Contributing to Intake of Choline and Individual Choline Forms in a Norwegian Cohort of Patients With Stable Angina Pectoris
Cited by: 8
Author(s): Anthea Van Parys, Therese Karlsson, Kathrine J. Vinknes, Trond E. Olsen, Jannike Øyen, Jutta Dierkes, Ottar Nygård, Vegard Lysne
Software Mentions: 11
Published: over 3 years ago

10.1186/s13059-018-1597-8

plyranges: a grammar of genomic data transformation
Cited by: 62
Author(s): Stuart Lee, Dianne Cook, Michael C. Lawrence
Software Mentions: 9
Published: almost 6 years ago

10.1371/journal.pone.0226069

Short-term treatment with a peroxisome proliferator-activated receptor α agonist influences plasma one-carbon metabolites and B-vitamin status in rats
Cited by: 3
Author(s): Vegard Lysne, Bodil Bjørndal, Mari Lausund Grinna, Øivind Midttun, Per Magne Ueland, Rolf K. Berge, Jutta Dierkes, Ottar Nygård, Elin Strand
Software Mentions: 9
Published: about 5 years ago

10.3389/fpsyg.2020.579545

When Large-Scale Assessments Meet Data Science: The Big-Fish-Little-Pond Effect in Fourth- and Eighth-Grade Mathematics Across Nations
Cited by: 4
Author(s): Ze Wang
Software Mentions: 8
Published: about 4 years ago

10.1007/s12031-020-01787-2

Studying Autism Using Untargeted Metabolomics in Newborn Screening Samples
Cited by: 13
Author(s): Julie Courraud, Madeleine Ernst, Susan Svane Laursen, David M. Hougaard, Arieh Cohen
Software Mentions: 8
Published: almost 4 years ago

10.1155/2019/8047627

Short-Term Activation of Peroxisome Proliferator-Activated Receptors<mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" id="M1"><mml:mrow><mml:mi>α</mml:mi></mml:mrow></mml:math>and<mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" id="M2"><mml:mrow><mml:mi>γ</mml:mi></mml:mrow></mml:math>Induces Tissue-Specific Effects on Lipid Metabolism and Fatty Acid Composition in Male Wistar Rats
Cited by: 18
Author(s): Elin Strand, Vegard Lysne, Mari Lausund Grinna, Pavol Bohov, Asbjørn Svardal, Ottar Nygård, Rolf K. Berge, Bodil Bjørndal
Software Mentions: 7
Published: over 5 years ago