Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pcbi.1007912

https://doi.org/10.1371/journal.pcbi.1007912

bigPint: A Bioconductor visualization package that makes big data pint-sized

Cited by: 3
Author(s): Lindsay Rutter, Dianne Cook
Published: over 4 years ago

Software Mentions 47

bioconductor: bigPint
Big multivariate data plotted interactively
Papers that mentioned: 3
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: EBSeq
An R package for gene and isoform differential expression analysis of RNA-seq data
Papers that mentioned: 261
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: iSEE
Interactive SummarizedExperiment Explorer
Papers that mentioned: 13
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: SummarizedExperiment
SummarizedExperiment container
Papers that mentioned: 52
cran: acepack
ACE and AVAS for Selecting Multiple Regression Transformations
Papers that mentioned: 2
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: fastmap
Fast Data Structures
Papers that mentioned: 3
cran: GGally
Extension to 'ggplot2'
Papers that mentioned: 87
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: gridExtra
Miscellaneous Functions for "Grid" Graphics
Papers that mentioned: 298
cran: hexbin
Hexagonal Binning Routines
Papers that mentioned: 20
cran: Hmisc
Harrell Miscellaneous
Papers that mentioned: 1,000
cran: htmlwidgets
HTML Widgets for R
Papers that mentioned: 14
cran: httpuv
HTTP and WebSocket Server Library
Papers that mentioned: 2
cran: jsonlite
A Simple and Robust JSON Parser and Generator for R
Papers that mentioned: 36
cran: magrittr
A Forward-Pipe Operator for R
Papers that mentioned: 107
cran: munsell
Utilities for Using Munsell Colours
Papers that mentioned: 2
cran: pkgconfig
Private Configuration for 'R' Packages
Papers that mentioned: 3
cran: plotly
Create Interactive Web Graphics via 'plotly.js'
Papers that mentioned: 163
cran: purrr
Functional Programming Tools
Papers that mentioned: 50
cran: Rcpp
Seamless R and C++ Integration
Papers that mentioned: 152
cran: rstudioapi
Safely Access the RStudio API
Papers that mentioned: 5
cran: Select
Determines Species Probabilities Based on Functional Traits
Papers that mentioned: 64
cran: shiny
Web Application Framework for R
Papers that mentioned: 127
cran: shinycssloaders
Add Loading Animations to a 'shiny' Output While It's Recalculating
Papers that mentioned: 14
cran: stringr
Simple, Consistent Wrappers for Common String Operations
Papers that mentioned: 172
cran: tibble
Simple Data Frames
Papers that mentioned: 47
cran: tidyr
Tidy Messy Data
Papers that mentioned: 321
cran: tidyselect
Select from a Set of Strings
Papers that mentioned: 3
cran: vctrs
Vector Helpers
Papers that mentioned: 2
cran: viridisLite
Colorblind-Friendly Color Maps (Lite Version)
Papers that mentioned: 7
cran: xfun
Supporting Functions for Packages Maintained by 'Yihui Xie'
Papers that mentioned: 2
cran: xtable
Export Tables to LaTeX or HTML
Papers that mentioned: 32
cran: zeallot
Multiple, Unpacking, and Destructuring Assignment
Papers that mentioned: 3
pypi: compiler
A data integrity check library
Papers that mentioned: 5
pypi: fastmap
Fastmap offloads arbitrary Python code via the open source fastmap cloud service.
Papers that mentioned: 3
pypi: PACE
Data Quality of Experimental Data
Papers that mentioned: 13,779
pypi: pkgconfig
Interface Python with pkg-config
Papers that mentioned: 3
pypi: plotly
An open-source, interactive data visualization library for Python
Papers that mentioned: 163
pypi: qt
Papers that mentioned: 3
pypi: shiny
A web development framework for Python.
Papers that mentioned: 127
pypi: splines
Splines in Euclidean Space and Beyond
Papers that mentioned: 91
pypi: stats
Calculator-style statistical functions
Papers that mentioned: 3,105
pypi: xtable
operate table format in console. console table, csv, json, yaml and markdown.
Papers that mentioned: 32