cran: Select | Projects | Ecosyste.ms: Papers

10.1371/journal.pcbi.1007912

bigPint: A Bioconductor visualization package that makes big data pint-sized
Cited by: 3
Author(s): Lindsay Rutter, Dianne Cook
Software Mentions: 47
Published: over 4 years ago

Unsupervised tensor decomposition-based method to extract candidate transcription factors as histone modification bookmarks in post-mitotic transcriptional reactivation
Cited by: 2
Author(s): Y-h. Taguchi, Turki Turki
Software Mentions: 8
Published: over 3 years ago

10.1186/s12864-019-6073-7

GENAVi: a shiny web application for gene expression normalization, analysis and visualization
Cited by: 36
Author(s): Alberto Luiz P Reyes, Tiago C. Silva, Simon Coetzee, Jasmine T Plummer, Brian D. Davis, Stephanie Chen, Dennis J. Hazelett, Kate Lawrenson, Benjamin P. Berman, Simon A. Gayther, Michelle R. Jones
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0246027

Procalcitonin, C-reactive protein, neutrophil gelatinase-associated lipocalin, resistin and the APTT waveform for the early diagnosis of serious bacterial infection and prediction of outcome in critically ill children
Cited by: 5
Author(s): Maryke Nielsen, Paul Baines, Rebecca Jennings, Sarah Siner, Ruwanthi Kolamunnage-Donà, Paul Newland, Matthew Peak, Christine Chesters, Graham Jeffers, Colin Downey, Caroline Broughton, Lynsey McColl, Jennifer Preston, Anthony Mckeever, Stéphane Paulus, Nigel Cunliffe, Enitan D. Carrol
Software Mentions: 4
Published: almost 4 years ago

10.7717/peerj.761

Concordance and discordance of sequence survey methods for molecular epidemiology
Cited by: 5
Author(s): Eduardo Castro-Nallar, Nur A. Hasan, Thomas A. Cebula, Rita R. Colwell, Richard A. Robison, W. Evan Johnson, Keith A. Crandall
Software Mentions: 3
Published: almost 10 years ago

10.1002/pld3.60

Expression of <i>FLOWERING LOCUS C</i> and a frameshift mutation of this gene on chromosome 20 differentiate a summer and winter annual biotype of <i>Camelina sativa</i>
Cited by: 23
Author(s): James V. Anderson, David P. Horvath, Münevver Doğramacı, Kevin M. Dorn, Wun S. Chao, Erin E. Watkin, Alvaro G. Hernandez, M. David Marks, Russ W. Gesch
Software Mentions: 3
Published: over 6 years ago

10.1016/j.ymthe.2019.09.023

Rescue from Stx2-Producing E. coli-Associated Encephalopathy by Intravenous Injection of Muse Cells in NOD-SCID Mice
Cited by: 13
Author(s): Ryo Ozuru, Shohei Wakao, Takahiro Tsuji, Naoya Ohara, Takashi Matsuba, Muhammad Y. Amuran, Junko Isobe, Morio Iino, Naoki Nishida, Sari Matsumoto, Kimiharu Iwadate, Noriko Konishi, Kaori Yasuda, Kosuke Tashiro, Misato Hida, Arisato Yadoiwa, Shinsuke Kato, Eijiro Yamashita, Sohkichi Matsumoto, Yoichi Kurozawa, Mari Dezawa, Jun Fujii
Software Mentions: 3
Published: almost 5 years ago

10.3389/fnins.2018.00587

BrainWave: A Matlab Toolbox for Beamformer Source Analysis of MEG Data
Cited by: 19
Author(s): Cecilia Jobst, Paul Ferrari, Silvia Isabella, Douglas Cheyne
Software Mentions: 3
Published: over 6 years ago

10.1186/s12935-021-02217-y

Dynamic serum biomarkers to predict the efficacy of PD-1 in patients with nasopharyngeal carcinoma
Cited by: 5
Author(s): Ao Zhang, Guanqing Zhong, Luocan Wang, Rongzeng Cai, Runkun Han, Caixia Xu, Shulin Chen, Peng Sun, Hao Chen
Software Mentions: 3
Published: about 3 years ago

10.3791/53450

A Pipeline for 3D Multimodality Image Integration and Computer-assisted Planning in Epilepsy Surgery
Cited by: 9
Author(s): Mark Nowell, Roman Rodionov, Gergely Zombori, Rachel Sparks, Michele Rizzi, Sébastien Ourselin, Anna Miserocchi, Andrew W. McEvoy, John S. Duncan
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0111239

Impact of Temporal Variation on Design and Analysis of Mouse Knockout Phenotyping Studies
Cited by: 44
Author(s): Natasha A. Karp, Anneliese O. Speak, Jacqueline K. White, David J. Adams, Martin Hrabé de Angelis, Yann Hérault, Richard Mott
Software Mentions: 2
Published: about 10 years ago

10.7717/peerj-cs.571

Distribution-preserving data augmentation
Cited by: 2
Author(s): Nurdan Saran, Murat Saran, Fatih Nar
Software Mentions: 2
Published: over 3 years ago

10.1093/tas/txaa217

Efficacy of commercial products on nursery pig growth performance fed diets with fumonisin contaminated corn
Cited by: 5
Author(s): Z. Prabhakara Rao, Mike D Tokach, S. S. Dritz, J. C. Woodworth, Joel M. DeRouchey, Robert D. Goodband, H. I. Calderón
Software Mentions: 2
Published: about 4 years ago

10.1186/s40168-018-0614-1

Wild bees and their nests host Paenibacillus bacteria with functional potential of avail
Cited by: 23
Author(s): Alexander Keller, Annette Brandel, Mira C. Becker, Rebecca Balles, Usama Ramadan Abdelmohsen, Markus J. Ankenbrand, Wiebke Sickel
Software Mentions: 2
Published: almost 6 years ago

10.7759/cureus.10821

Physical and Psychological Symptoms Associated With Premenstrual Syndrome and Their Impact on the Daily Routine of Women in a Low Socioeconomic Status Locality
Cited by: 3
Author(s): Kiran Abbas, Ghazala Usman, Moiz Ahmed, Rabab Qazi, Ayesha Asghar, Aresha Masood Shah, Aliza Rizvi, Kanza Abid, Kousain U Haq, Amber Tahir, Syed Muhammad Usama
Software Mentions: 2
Published: about 4 years ago

10.1186/s13007-016-0108-8

A novel method to characterize silica bodies in grasses
Cited by: 20
Author(s): Clemon J. Dabney, Jason Ostergaard, Eric Watkins, Changbin Chen
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pntd.0001715

Burkholderia pseudomallei Known Siderophores and Hemin Uptake Are Dispensable for Lethal Murine Melioidosis
Cited by: 38
Author(s): Brian H. Kvitko, Andrew Goodyear, Katie L. Propst, Steven Dow, Herbert P. Schweizer
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0159185

A Low-Cost iPhone-Assisted Augmented Reality Solution for the Localization of Intracranial Lesions
Cited by: 29
Author(s): Yuanzheng Hou, Liang Ma, Ru-yuan Zhu, Xiaolei Chen, Jun Zhang
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0155128

Characterization of a Mutant Deficient for Ammonium and Nitric Oxide Signalling in the Model System Chlamydomonas reinhardtii
Cited by: 10
Author(s): Emanuel Sanz-Luque, Francisco Ocaña-Calahorro, Aurora Galván, Emilio Fernández, Amaury de Montaigu
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0005410

A Conserved Multi-Gene Family Induces Cross-Reactive Antibodies Effective in Defense against Plasmodium falciparum
Cited by: 60
Author(s): Subhash Singh, Soe Soé, Simon Weisman, John W. Barnwell, Jean‐Louis Pérignon, Pierre Druilhe
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0177788

Efficient method for site-directed mutagenesis in large plasmids without subcloning
Cited by: 8
Author(s): Louay K. Hallak, Kelly A. Berger, Rita Wen Kaspar, Anna Kwilas, Federica Montanaro, Mark E. Peeples
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0248453

Plasma concentrations of progesterone in the preceding estrous cycle are associated with the intensity of estrus and fertility of Holstein cows
Cited by: 6
Author(s): A.M.L. Madureira, T.A. Burnett, S. Borchardt, W. Heuwieser, Christine F. Baes, José Luiz Moraes Vasconcelos, R.L.A. Cerri
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0030789

Characterization of Ceftazidime Resistance Mechanisms in Clinical Isolates of Burkholderia pseudomallei from Australia
Cited by: 77
Author(s): Derek S. Sarovich, Erin P. Price, Alex Von Schulze, James M. Cook, Mark Mayo, Lindsey M. Watson, Leisha J. Richardson, Meagan L. Seymour, Apichai Tuanyok, David M. Engelthaler, Talima Pearson, Sharon J. Peacock, Bart J. Currie, Paul Keim, David M. Wagner
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0218397

Using targeted next-generation sequencing to characterize genetic differences associated with insecticide resistance in Culex quinquefasciatus populations from the southern U.S.
Cited by: 11
Author(s): Linda Kothera, John H. Phan, Enas H. Ghallab, Mark J. Delorey, Rebecca J. Clark, Harry M. Savage
Software Mentions: 1
Published: over 5 years ago

10.3390/children7080090

Evaluating and Enhancing the Preparation of Patients and Families before Pediatric Surgery
Cited by: 2
Author(s): Christopher Newell, Heather Leduc‐Pessah, Lisa Bell-Graham, Nivez Rasic, Kerryn D. Carter
Software Mentions: 1
Published: over 4 years ago

10.1016/j.dib.2018.08.005

Dataset and GIS toolbox for modeling potential tree belt functions
Cited by: 0
Author(s): Maciej M. Nowak, Katarzyna Pędziwiatr
Software Mentions: 1
Published: about 6 years ago

10.1007/s13300-018-0392-6

User Performance Evaluation of Four Blood Glucose Monitoring Systems Applying ISO 15197:2013 Accuracy Criteria and Calculation of Insulin Dosing Errors
Cited by: 9
Author(s): Guido Freckmann, Nina Jendrike, Annette Baumstark, Stefan Pleus, Christina Liebing, Cornelia Haug
Software Mentions: 1
Published: over 6 years ago

10.12688/f1000research.27115.1

Recent advances in understanding, diagnosing and treating venous thrombosis
Cited by: 5
Author(s): Noel Chan, Jeffrey I. Weitz
Software Mentions: 1
Published: about 4 years ago

10.12688/f1000research.4392.2

setsApp for Cytoscape: Set operations for Cytoscape Nodes and Edges
Cited by: 2
Author(s): John H. Morris, Samad Lotia, Allan D. Wu, Nadezhda T. Doncheva, Mario Albrecht, Alexander R. Pico, Thomas E. Ferrin
Software Mentions: 1
Published: over 9 years ago

10.3389/fnins.2016.00144

Rapid Quantitative Pharmacodynamic Imaging with Bayesian Estimation
Cited by: 3
Author(s): Jonathan M. Koller, Martin Vachon, G. Larry Bretthorst, Kevin J. Black
Software Mentions: 1
Published: over 8 years ago

10.3389/fpls.2017.01520

Candidate Reference Genes Selection and Application for RT-qPCR Analysis in Kenaf with Cytoplasmic Male Sterility Background
Cited by: 10
Author(s): Bujin Zhou, Peng Chen, Aziz Khan, Yunlong Zhao, Lihong Chen, Dongmei Liu, Xiaofang Liao, Xiangjun Kong, Ran Zhou
Software Mentions: 1
Published: about 7 years ago

10.3389/fpubh.2014.00291

The Conversion of a Practice-Based Lifestyle Enhancement Program into a Formalized, Testable Program: From Texercise Classic to Texercise Select
Cited by: 10
Author(s): Marcia G. Ory, Matthew Lee Smith, Doris A. Howell, Alyson Zollinger, Cindy Quinn, Suzanne M. Swierc, Alan Stevens
Software Mentions: 1
Published: over 9 years ago

10.1111/irv.12698

Biosafety risk assessment for production of candidate vaccine viruses to protect humans from zoonotic highly pathogenic avian influenza viruses
Cited by: 4
Author(s): Li‐Mei Chen, Ruben O. Donis, David L. Suarez, David E. Wentworth, Richard J. Webby, Othmar G. Engelhardt, David E. Swayne
Software Mentions: 1
Published: about 5 years ago

10.1007/s13244-016-0523-4

Summary of the proceedings of the international forum 2016: “Imaging referral guidelines and clinical decision support - how can radiologists implement imaging referral guidelines in clinical routine?”
Cited by: 21
Author(s):
Software Mentions: 1
Published: almost 8 years ago

10.7150/jca.35247

Increase of secondary mutations may be a drug-resistance mechanism for lung adenocarcinoma after radiation therapy combined with tyrosine kinase inhibitor
Cited by: 3
Author(s): Hong Zhuang, Siyu Shi, Yirui Guo, Zhongqiu Wang
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13321-021-00489-0

Empowering large chemical knowledge bases for exposomics: PubChemLite meets MetFrag
Cited by: 51
Author(s): Emma L. Schymanski, Todor Kondić, Steffen Neumann, Paul A. Thiessen, Jian Zhang, Evan Bolton
Software Mentions: 1
Published: over 3 years ago

10.1186/s12958-016-0193-6

Accuracy of preimplantation genetic screening (PGS) is compromised by degree of mosaicism of human embryos
Cited by: 88
Author(s): Norbert Gleicher, Andrea Vidali, Jeffrey Braverman, Vitaly A. Kushnir, David H. Barad, C. Hudson, Yan-Guang Wu, Qi Wang, Lin Zhang, David F. Albertini
Software Mentions: 1
Published: about 8 years ago

10.1038/srep38388

Risk assessment of recent Egyptian H5N1 influenza viruses
Cited by: 15
Author(s): Abdel-Satar Arafa, S. Yamada, Masaki Imai, Tokiko Watanabe, Seiya Yamayoshi, Kiyoko Iwatsuki‐Horimoto, Maki Kiso, Yuko Sakai‐Tagawa, Mutsumi Ito, Takeaki Imamura, N. Nakajima, Keiichi Takahashi, Dongming Zhao, Kohei Oishi, Atsuhiro Yasuhara, Catherine A. Macken, Gongxun Zhong, Anthony Hanson, Shilong Fan, Jihui Ping, Masato Hatta, Tiago J. S. Lopes, Yasuo Suzuki, Mohamed H. El-Husseiny, Abdullah Selim, Naglaa M. Hagag, M. . Veterinary Serum Soliman, Gabriele Neumann, Hideki Hasegawa, Yoshihiro Kawaoka
Software Mentions: 1
Published: almost 8 years ago

10.3390/s120607719

Managing RFID Sensors Networks with a General Purpose RFID Middleware
Cited by: 19
Author(s): Ismael Abad, Carlos Cerrada, J.A. Cerrada, Rubén Heradio, Enrique Valero
Software Mentions: 1
Published: over 12 years ago

10.3390/s17122958

Optimal Rate Schedules with Data Sharing in Energy Harvesting Communication Systems
Cited by: 1
Author(s): Weiwei Wu, Huafan Li, Feng Shan, Yingchao Zhao
Software Mentions: 1
Published: almost 7 years ago

10.3390/s18041282

A Low Power IoT Sensor Node Architecture for Waste Management Within Smart Cities Context
Cited by: 103
Author(s): Matteo Cerchecci, Francesco Luti, A. Mecocci, Stefano Parrino, Giacomo Peruzzi, Alessandro Pozzebon
Software Mentions: 1
Published: over 6 years ago

10.3390/s18051609

Secure Data Access Control for Fog Computing Based on Multi-Authority Attribute-Based Signcryption with Computation Outsourcing and Attribute Revocation
Cited by: 28
Author(s): Qian Xu, Chengxiang Tan, Zhijie Fan, Wei Zhu, Ya Xiao, Fujia Cheng
Software Mentions: 1
Published: over 6 years ago

10.1186/s13568-020-01025-3

Rich production media as a platform for CHO cell line development
Cited by: 7
Author(s): Yong Jae Kim, Sang Kyul Han, Seongtae Yoon, Chan Wha Kim
Software Mentions: 1
Published: over 4 years ago

10.1186/s40793-015-0122-x

Draft genome of the Arabidopsis thaliana phyllosphere bacterium, Williamsia sp. ARP1
Cited by: 10
Author(s): Hannes Horn, Alexander Keller, U. Hildebrandt, Peter Kämpfer, Markus Riederer, Ute Hentschel
Software Mentions: 1
Published: almost 9 years ago

10.1055/s-0039-1696659

Treatment of Cancer-Associated Thrombosis: Beyond HOKUSAI
Cited by: 9
Author(s): Isabelle Mahé, Ismaı̈l Elalamy, Grigoris T. Gerotziafas, Philippe Girard
Software Mentions: 1
Published: over 5 years ago

10.1186/s12966-017-0563-2

Effect of a mobile app intervention on vegetable consumption in overweight adults: a randomized controlled trial
Cited by: 61
Author(s): Sarah Mummah, Thomas N. Robinson, Maya B. Mathur, Sarah Farzinkhou, Stephen Sutton, Christopher D. Gardner
Software Mentions: 1
Published: about 7 years ago

10.1093/jme/tjz046

Ability of Two Commercially Available Host-Targeted Technologies to Reduce Abundance of Ixodes scapularis (Acari: Ixodidae) in a Residential Landscape
Cited by: 22
Author(s): Robert Jordan, Terry L. Schulze
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.63262

A digital 3D reference atlas reveals cellular growth patterns shaping the Arabidopsis ovule
Cited by: 38
Author(s): Athul Vijayan, Rachele Tofanelli, Soeren Strauss, Lorenzo Cerrone, Adrian Wolny, Joanna Strohmeier, Anna Kreshuk, Fred A. Hamprecht, Richard S. Smith, Kay Schneitz
Software Mentions: 1
Published: almost 4 years ago

10.1590/1677-5449.005518

Anticoagulantes orais diretos para o tratamento da trombose venosa profunda: revisão de revisões sistemáticas
Cited by: 6
Author(s): Gustavo Muçouçah Sampaio Brandão, Raissa Carolina Fonseca Cândido, Hamilton de Almeida Rollo, Marcone Lima Sobreira, Daniela R Junqueira
Software Mentions: 1
Published: almost 6 years ago

10.3390/s19030532

Health-Aware Model-Predictive Control of a Cooperative AGV-Based Production System
Cited by: 14
Author(s): Beata Mrugalska, Ralf Stetter
Software Mentions: 1
Published: almost 6 years ago

10.1186/1751-0147-50-38

Evaluation of Petrifilm™ Select E. coli Count Plate medium to discriminate antimicrobial resistant Escherichia coli
Cited by: 14
Author(s): Shuyu Wu, E. Chouliara, Lars Jensen, Anders Dalsgaard
Software Mentions: 1
Published: about 16 years ago

10.1093/advances/nmy053

Perspective: Are We Ready to Measure Child Nutritional Status with Lasers?
Cited by: 1
Author(s): Joel Conkle, Reynaldo Martorell
Software Mentions: 1
Published: almost 6 years ago

10.3390/ani11071910

Gene Expression and Carcass Traits Are Different between Different Quality Grade Groups in Red-Faced Hereford Steers
Cited by: 5
Author(s): Bailey Engle, Molly Masters, J.A. Boles, Jennifer M. Thomson
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2164-15-113

Copy number variations of the extensively amplified Y-linked genes, HSFY and ZNF280BY, in cattle and their association with male reproductive traits in Holstein bulls
Cited by: 37
Author(s): Xiumei Yue, C.D. Dechow, Ti-Cheng Chang, J. M. Dejarnette, Christopher Marshall, Chuzhao Lei, Wan-Sheng Liu
Software Mentions: 1
Published: almost 11 years ago

10.1242/bio.015727

Rac1 controls epithelial tube length through the apical secretion and polarity pathways
Cited by: 9
Author(s): Kévin Sollier, Helori-Maël Gaudé, François Chartier, Patrick Laprise
Software Mentions: 1
Published: almost 9 years ago

10.1155/2020/4965670

Studying the Role and Molecular Mechanisms of MAP4K3 in Sorafenib Resistance of Hepatocellular Carcinoma
Cited by: 3
Author(s): Yi Shi, Xiaofei Mo, Simei Hong, Tianbao Li, Baozhen Chen, Gang Chen
Software Mentions: 1
Published: about 4 years ago

10.1186/bcr3677

Breast-related effects of selective estrogen receptor modulators and tissue-selective estrogen complexes
Cited by: 14
Author(s): Carolyn L. Smith, Richard J. Santen, Barry S. Komm, Sebastián Mirkin
Software Mentions: 1
Published: over 10 years ago

10.1155/2016/4278724

Hepatitis B Awareness and Knowledge in Asian Communities in British Columbia
Cited by: 20
Author(s): Alan Hoi Lun Yau, Jo‐Ann Ford, P. Kwan, Jessica Ip Chan, Queenie Choo, Tim K. Lee, Willie Kwong, Alan Huang, Eric M. Yoshida
Software Mentions: 1
Published: almost 9 years ago

10.1002/cam4.2821

Density of breast: An independent risk factor for developing breast cancer, a prospective study at two premium breast centers
Cited by: 0
Author(s): Chia Hwee Lo, Xin Ying Chai, Shirley Shy Wen Ting, Sze Chao Ang, Xin Lin Chin, Lay Teng Tan, Peeroo Saania, Tuan Nur’ Azmah Tuan Mat, Seniyah Mat Sikin, Anil Gandhi
Software Mentions: 1
Published: over 4 years ago

10.1186/s13041-014-0054-1

The Amyloid Precursor Protein is rapidly transported from the Golgi apparatus to the lysosome and where it is processed into beta-amyloid
Cited by: 62
Author(s): Joshua H. K. Tam, Claudia Seah, Stephen Pasternak
Software Mentions: 1
Published: over 10 years ago

10.1089/vbz.2018.2431

Arthropod Containment Guidelines, Version 3.2
Cited by: 24
Author(s): American Committee of Medical Entom
Software Mentions: 1
Published: over 5 years ago

10.4103/wjtcm.wjtcm_33_19

Aristolochic acid-induced genotoxicity and toxicogenomic changes in rodents
Cited by: 15
Author(s): Xi Lin Li, Xiao Guo, Hairong Wang, Tao Chen, Nan Mei
Software Mentions: 1
Published: almost 5 years ago

10.1007/s00345-020-03383-w

Consultation on kidney stones, Copenhagen 2019: lithotripsy in percutaneous nephrolithotomy
Cited by: 17
Author(s): Tomas Axelsson, Cecilia Maria Cracco, Mahesh Desai, Mudhar N. Hasan, Thomas Knoll, Emanuele Montanari, Daniel Pérez-Fentes, Michael Straub, Kay Thomas, James C. Williams, Marianne Brehmer, Palle Jørn Sloth Osther
Software Mentions: 1
Published: over 4 years ago

10.7717/peerj-cs.273

Influence of tweets and diversification on serendipitous research paper recommender systems
Cited by: 4
Author(s): Chifumi Nishioka, Jörn Hauke, Ansgar Scherp
Software Mentions: 1
Published: over 4 years ago

Projects: cran: Select

Papers Mentioning Select 64