Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: Select
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/Select
Determines Species Probabilities Based on Functional Traits
5 versions
Latest release: over 6 years ago
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Papers Mentioning Select 64
10.1371/journal.pcbi.1007912
bigPint: A Bioconductor visualization package that makes big data pint-sizedCited by: 3
Author(s): Lindsay Rutter, Dianne Cook
Software Mentions: 47
Published: over 4 years ago
10.1371/journal.pone.0251032
Unsupervised tensor decomposition-based method to extract candidate transcription factors as histone modification bookmarks in post-mitotic transcriptional reactivationCited by: 2
Author(s): Y-h. Taguchi, Turki Turki
Software Mentions: 8
Published: over 3 years ago
10.1186/s12864-019-6073-7
GENAVi: a shiny web application for gene expression normalization, analysis and visualizationCited by: 36
Author(s): Alberto Luiz P Reyes, Tiago C. Silva, Simon Coetzee, Jasmine T Plummer, Brian D. Davis, Stephanie Chen, Dennis J. Hazelett, Kate Lawrenson, Benjamin P. Berman, Simon A. Gayther, Michelle R. Jones
Software Mentions: 6
Published: about 5 years ago
10.1371/journal.pone.0246027
Procalcitonin, C-reactive protein, neutrophil gelatinase-associated lipocalin, resistin and the APTT waveform for the early diagnosis of serious bacterial infection and prediction of outcome in critically ill childrenCited by: 5
Author(s): Maryke Nielsen, Paul Baines, Rebecca Jennings, Sarah Siner, Ruwanthi Kolamunnage-Donà, Paul Newland, Matthew Peak, Christine Chesters, Graham Jeffers, Colin Downey, Caroline Broughton, Lynsey McColl, Jennifer Preston, Anthony Mckeever, Stéphane Paulus, Nigel Cunliffe, Enitan D. Carrol
Software Mentions: 4
Published: almost 4 years ago
10.7717/peerj.761
Concordance and discordance of sequence survey methods for molecular epidemiologyCited by: 5
Author(s): Eduardo Castro-Nallar, Nur A. Hasan, Thomas A. Cebula, Rita R. Colwell, Richard A. Robison, W. Evan Johnson, Keith A. Crandall
Software Mentions: 3
Published: over 9 years ago
10.1002/pld3.60
Expression of <i>FLOWERING LOCUS C</i> and a frameshift mutation of this gene on chromosome 20 differentiate a summer and winter annual biotype of <i>Camelina sativa</i>Cited by: 23
Author(s): James V. Anderson, David P. Horvath, Münevver Doğramacı, Kevin M. Dorn, Wun S. Chao, Erin E. Watkin, Alvaro G. Hernandez, M. David Marks, Russ W. Gesch
Software Mentions: 3
Published: over 6 years ago
10.1016/j.ymthe.2019.09.023
Rescue from Stx2-Producing E. coli-Associated Encephalopathy by Intravenous Injection of Muse Cells in NOD-SCID MiceCited by: 13
Author(s): Ryo Ozuru, Shohei Wakao, Takahiro Tsuji, Naoya Ohara, Takashi Matsuba, Muhammad Y. Amuran, Junko Isobe, Morio Iino, Naoki Nishida, Sari Matsumoto, Kimiharu Iwadate, Noriko Konishi, Kaori Yasuda, Kosuke Tashiro, Misato Hida, Arisato Yadoiwa, Shinsuke Kato, Eijiro Yamashita, Sohkichi Matsumoto, Yoichi Kurozawa, Mari Dezawa, Jun Fujii
Software Mentions: 3
Published: almost 5 years ago
10.3389/fnins.2018.00587
BrainWave: A Matlab Toolbox for Beamformer Source Analysis of MEG DataCited by: 19
Author(s): Cecilia Jobst, Paul Ferrari, Silvia Isabella, Douglas Cheyne
Software Mentions: 3
Published: about 6 years ago
10.1186/s12935-021-02217-y
Dynamic serum biomarkers to predict the efficacy of PD-1 in patients with nasopharyngeal carcinomaCited by: 5
Author(s): Ao Zhang, Guanqing Zhong, Luocan Wang, Rongzeng Cai, Runkun Han, Caixia Xu, Shulin Chen, Peng Sun, Hao Chen
Software Mentions: 3
Published: about 3 years ago
10.3791/53450
A Pipeline for 3D Multimodality Image Integration and Computer-assisted Planning in Epilepsy SurgeryCited by: 9
Author(s): Mark Nowell, Roman Rodionov, Gergely Zombori, Rachel Sparks, Michele Rizzi, Sébastien Ourselin, Anna Miserocchi, Andrew W. McEvoy, John S. Duncan
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0111239
Impact of Temporal Variation on Design and Analysis of Mouse Knockout Phenotyping StudiesCited by: 44
Author(s): Natasha A. Karp, Anneliese O. Speak, Jacqueline K. White, David J. Adams, Martin Hrabé de Angelis, Yann Hérault, Richard Mott
Software Mentions: 2
Published: about 10 years ago
10.7717/peerj-cs.571
Distribution-preserving data augmentationCited by: 2
Author(s): Nurdan Saran, Murat Saran, Fatih Nar
Software Mentions: 2
Published: over 3 years ago
10.1093/tas/txaa217
Efficacy of commercial products on nursery pig growth performance fed diets with fumonisin contaminated cornCited by: 5
Author(s): Z. Prabhakara Rao, Mike D Tokach, S. S. Dritz, J. C. Woodworth, Joel M. DeRouchey, Robert D. Goodband, H. I. Calderón
Software Mentions: 2
Published: about 4 years ago
10.1186/s40168-018-0614-1
Wild bees and their nests host Paenibacillus bacteria with functional potential of availCited by: 23
Author(s): Alexander Keller, Annette Brandel, Mira C. Becker, Rebecca Balles, Usama Ramadan Abdelmohsen, Markus J. Ankenbrand, Wiebke Sickel
Software Mentions: 2
Published: almost 6 years ago
10.7759/cureus.10821
Physical and Psychological Symptoms Associated With Premenstrual Syndrome and Their Impact on the Daily Routine of Women in a Low Socioeconomic Status LocalityCited by: 3
Author(s): Kiran Abbas, Ghazala Usman, Moiz Ahmed, Rabab Qazi, Ayesha Asghar, Aresha Masood Shah, Aliza Rizvi, Kanza Abid, Kousain U Haq, Amber Tahir, Syed Muhammad Usama
Software Mentions: 2
Published: about 4 years ago
10.1186/s13007-016-0108-8
A novel method to characterize silica bodies in grassesCited by: 20
Author(s): Clemon J. Dabney, Jason Ostergaard, Eric Watkins, Changbin Chen
Software Mentions: 1
Published: almost 9 years ago
10.1371/journal.pntd.0001715
Burkholderia pseudomallei Known Siderophores and Hemin Uptake Are Dispensable for Lethal Murine MelioidosisCited by: 38
Author(s): Brian H. Kvitko, Andrew Goodyear, Katie L. Propst, Steven Dow, Herbert P. Schweizer
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0159185
A Low-Cost iPhone-Assisted Augmented Reality Solution for the Localization of Intracranial LesionsCited by: 29
Author(s): Yuanzheng Hou, Liang Ma, Ru-yuan Zhu, Xiaolei Chen, Jun Zhang
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0155128
Characterization of a Mutant Deficient for Ammonium and Nitric Oxide Signalling in the Model System Chlamydomonas reinhardtiiCited by: 10
Author(s): Emanuel Sanz-Luque, Francisco Ocaña-Calahorro, Aurora Galván, Emilio Fernández, Amaury de Montaigu
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0005410
A Conserved Multi-Gene Family Induces Cross-Reactive Antibodies Effective in Defense against Plasmodium falciparumCited by: 60
Author(s): Subhash Singh, Soe Soé, Simon Weisman, John W. Barnwell, Jean‐Louis Pérignon, Pierre Druilhe
Software Mentions: 1
Published: over 15 years ago
10.1371/journal.pone.0177788
Efficient method for site-directed mutagenesis in large plasmids without subcloningCited by: 8
Author(s): Louay K. Hallak, Kelly A. Berger, Rita Wen Kaspar, Anna Kwilas, Federica Montanaro, Mark E. Peeples
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0248453
Plasma concentrations of progesterone in the preceding estrous cycle are associated with the intensity of estrus and fertility of Holstein cowsCited by: 6
Author(s): A.M.L. Madureira, T.A. Burnett, S. Borchardt, W. Heuwieser, Christine F. Baes, José Luiz Moraes Vasconcelos, R.L.A. Cerri
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0030789
Characterization of Ceftazidime Resistance Mechanisms in Clinical Isolates of Burkholderia pseudomallei from AustraliaCited by: 77
Author(s): Derek S. Sarovich, Erin P. Price, Alex Von Schulze, James M. Cook, Mark Mayo, Lindsey M. Watson, Leisha J. Richardson, Meagan L. Seymour, Apichai Tuanyok, David M. Engelthaler, Talima Pearson, Sharon J. Peacock, Bart J. Currie, Paul Keim, David M. Wagner
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0218397
Using targeted next-generation sequencing to characterize genetic differences associated with insecticide resistance in Culex quinquefasciatus populations from the southern U.S.Cited by: 11
Author(s): Linda Kothera, John H. Phan, Enas H. Ghallab, Mark J. Delorey, Rebecca J. Clark, Harry M. Savage
Software Mentions: 1
Published: over 5 years ago
10.3390/children7080090
Evaluating and Enhancing the Preparation of Patients and Families before Pediatric SurgeryCited by: 2
Author(s): Christopher Newell, Heather Leduc‐Pessah, Lisa Bell-Graham, Nivez Rasic, Kerryn D. Carter
Software Mentions: 1
Published: over 4 years ago
10.1016/j.dib.2018.08.005
Dataset and GIS toolbox for modeling potential tree belt functionsCited by: 0
Author(s): Maciej M. Nowak, Katarzyna Pędziwiatr
Software Mentions: 1
Published: about 6 years ago
10.1007/s13300-018-0392-6
User Performance Evaluation of Four Blood Glucose Monitoring Systems Applying ISO 15197:2013 Accuracy Criteria and Calculation of Insulin Dosing ErrorsCited by: 9
Author(s): Guido Freckmann, Nina Jendrike, Annette Baumstark, Stefan Pleus, Christina Liebing, Cornelia Haug
Software Mentions: 1
Published: over 6 years ago
10.12688/f1000research.27115.1
Recent advances in understanding, diagnosing and treating venous thrombosisCited by: 5
Author(s): Noel Chan, Jeffrey I. Weitz
Software Mentions: 1
Published: about 4 years ago
10.12688/f1000research.4392.2
setsApp for Cytoscape: Set operations for Cytoscape Nodes and EdgesCited by: 2
Author(s): John H. Morris, Samad Lotia, Allan D. Wu, Nadezhda T. Doncheva, Mario Albrecht, Alexander R. Pico, Thomas E. Ferrin
Software Mentions: 1
Published: over 9 years ago
10.3389/fnins.2016.00144
Rapid Quantitative Pharmacodynamic Imaging with Bayesian EstimationCited by: 3
Author(s): Jonathan M. Koller, Martin Vachon, G. Larry Bretthorst, Kevin J. Black
Software Mentions: 1
Published: over 8 years ago
10.3389/fpls.2017.01520
Candidate Reference Genes Selection and Application for RT-qPCR Analysis in Kenaf with Cytoplasmic Male Sterility BackgroundCited by: 10
Author(s): Bujin Zhou, Peng Chen, Aziz Khan, Yunlong Zhao, Lihong Chen, Dongmei Liu, Xiaofang Liao, Xiangjun Kong, Ran Zhou
Software Mentions: 1
Published: about 7 years ago
10.3389/fpubh.2014.00291
The Conversion of a Practice-Based Lifestyle Enhancement Program into a Formalized, Testable Program: From Texercise Classic to Texercise SelectCited by: 10
Author(s): Marcia G. Ory, Matthew Lee Smith, Doris A. Howell, Alyson Zollinger, Cindy Quinn, Suzanne M. Swierc, Alan Stevens
Software Mentions: 1
Published: over 9 years ago
10.1111/irv.12698
Biosafety risk assessment for production of candidate vaccine viruses to protect humans from zoonotic highly pathogenic avian influenza virusesCited by: 4
Author(s): Li‐Mei Chen, Ruben O. Donis, David L. Suarez, David E. Wentworth, Richard J. Webby, Othmar G. Engelhardt, David E. Swayne
Software Mentions: 1
Published: about 5 years ago
10.1007/s13244-016-0523-4
Summary of the proceedings of the international forum 2016: “Imaging referral guidelines and clinical decision support - how can radiologists implement imaging referral guidelines in clinical routine?”Cited by: 21
Author(s):
Software Mentions: 1
Published: almost 8 years ago
10.7150/jca.35247
Increase of secondary mutations may be a drug-resistance mechanism for lung adenocarcinoma after radiation therapy combined with tyrosine kinase inhibitorCited by: 3
Author(s): Hong Zhuang, Siyu Shi, Yirui Guo, Zhongqiu Wang
Software Mentions: 1
Published: almost 6 years ago
10.1186/s13321-021-00489-0
Empowering large chemical knowledge bases for exposomics: PubChemLite meets MetFragCited by: 51
Author(s): Emma L. Schymanski, Todor Kondić, Steffen Neumann, Paul A. Thiessen, Jian Zhang, Evan Bolton
Software Mentions: 1
Published: over 3 years ago
10.1186/s12958-016-0193-6
Accuracy of preimplantation genetic screening (PGS) is compromised by degree of mosaicism of human embryosCited by: 88
Author(s): Norbert Gleicher, Andrea Vidali, Jeffrey Braverman, Vitaly A. Kushnir, David H. Barad, C. Hudson, Yan-Guang Wu, Qi Wang, Lin Zhang, David F. Albertini
Software Mentions: 1
Published: about 8 years ago
10.1038/srep38388
Risk assessment of recent Egyptian H5N1 influenza virusesCited by: 15
Author(s): Abdel-Satar Arafa, S. Yamada, Masaki Imai, Tokiko Watanabe, Seiya Yamayoshi, Kiyoko Iwatsuki‐Horimoto, Maki Kiso, Yuko Sakai‐Tagawa, Mutsumi Ito, Takeaki Imamura, N. Nakajima, Keiichi Takahashi, Dongming Zhao, Kohei Oishi, Atsuhiro Yasuhara, Catherine A. Macken, Gongxun Zhong, Anthony Hanson, Shilong Fan, Jihui Ping, Masato Hatta, Tiago J. S. Lopes, Yasuo Suzuki, Mohamed H. El-Husseiny, Abdullah Selim, Naglaa M. Hagag, M. . Veterinary Serum Soliman, Gabriele Neumann, Hideki Hasegawa, Yoshihiro Kawaoka
Software Mentions: 1
Published: almost 8 years ago
10.3390/s120607719
Managing RFID Sensors Networks with a General Purpose RFID MiddlewareCited by: 19
Author(s): Ismael Abad, Carlos Cerrada, J.A. Cerrada, Rubén Heradio, Enrique Valero
Software Mentions: 1
Published: over 12 years ago
10.3390/s17122958
Optimal Rate Schedules with Data Sharing in Energy Harvesting Communication SystemsCited by: 1
Author(s): Weiwei Wu, Huafan Li, Feng Shan, Yingchao Zhao
Software Mentions: 1
Published: almost 7 years ago
10.3390/s18041282
A Low Power IoT Sensor Node Architecture for Waste Management Within Smart Cities ContextCited by: 103
Author(s): Matteo Cerchecci, Francesco Luti, A. Mecocci, Stefano Parrino, Giacomo Peruzzi, Alessandro Pozzebon
Software Mentions: 1
Published: over 6 years ago
10.3390/s18051609
Secure Data Access Control for Fog Computing Based on Multi-Authority Attribute-Based Signcryption with Computation Outsourcing and Attribute RevocationCited by: 28
Author(s): Qian Xu, Chengxiang Tan, Zhijie Fan, Wei Zhu, Ya Xiao, Fujia Cheng
Software Mentions: 1
Published: over 6 years ago
10.1186/s13568-020-01025-3
Rich production media as a platform for CHO cell line developmentCited by: 7
Author(s): Yong Jae Kim, Sang Kyul Han, Seongtae Yoon, Chan Wha Kim
Software Mentions: 1
Published: over 4 years ago
10.1186/s40793-015-0122-x
Draft genome of the Arabidopsis thaliana phyllosphere bacterium, Williamsia sp. ARP1Cited by: 10
Author(s): Hannes Horn, Alexander Keller, U. Hildebrandt, Peter Kämpfer, Markus Riederer, Ute Hentschel
Software Mentions: 1
Published: almost 9 years ago
10.1055/s-0039-1696659
Treatment of Cancer-Associated Thrombosis: Beyond HOKUSAICited by: 9
Author(s): Isabelle Mahé, Ismaı̈l Elalamy, Grigoris T. Gerotziafas, Philippe Girard
Software Mentions: 1
Published: over 5 years ago
10.1186/s12966-017-0563-2
Effect of a mobile app intervention on vegetable consumption in overweight adults: a randomized controlled trialCited by: 61
Author(s): Sarah Mummah, Thomas N. Robinson, Maya B. Mathur, Sarah Farzinkhou, Stephen Sutton, Christopher D. Gardner
Software Mentions: 1
Published: about 7 years ago
10.1093/jme/tjz046
Ability of Two Commercially Available Host-Targeted Technologies to Reduce Abundance of Ixodes scapularis (Acari: Ixodidae) in a Residential LandscapeCited by: 22
Author(s): Robert Jordan, Terry L. Schulze
Software Mentions: 1
Published: over 5 years ago
10.7554/eLife.63262
A digital 3D reference atlas reveals cellular growth patterns shaping the Arabidopsis ovuleCited by: 38
Author(s): Athul Vijayan, Rachele Tofanelli, Soeren Strauss, Lorenzo Cerrone, Adrian Wolny, Joanna Strohmeier, Anna Kreshuk, Fred A. Hamprecht, Richard S. Smith, Kay Schneitz
Software Mentions: 1
Published: almost 4 years ago
10.1590/1677-5449.005518
Anticoagulantes orais diretos para o tratamento da trombose venosa profunda: revisão de revisões sistemáticasCited by: 6
Author(s): Gustavo Muçouçah Sampaio Brandão, Raissa Carolina Fonseca Cândido, Hamilton de Almeida Rollo, Marcone Lima Sobreira, Daniela R Junqueira
Software Mentions: 1
Published: almost 6 years ago
10.3390/s19030532
Health-Aware Model-Predictive Control of a Cooperative AGV-Based Production SystemCited by: 14
Author(s): Beata Mrugalska, Ralf Stetter
Software Mentions: 1
Published: almost 6 years ago
10.1186/1751-0147-50-38
Evaluation of Petrifilm™ Select E. coli Count Plate medium to discriminate antimicrobial resistant Escherichia coliCited by: 14
Author(s): Shuyu Wu, E. Chouliara, Lars Jensen, Anders Dalsgaard
Software Mentions: 1
Published: about 16 years ago
10.1093/advances/nmy053
Perspective: Are We Ready to Measure Child Nutritional Status with Lasers?Cited by: 1
Author(s): Joel Conkle, Reynaldo Martorell
Software Mentions: 1
Published: almost 6 years ago
10.3390/ani11071910
Gene Expression and Carcass Traits Are Different between Different Quality Grade Groups in Red-Faced Hereford SteersCited by: 5
Author(s): Bailey Engle, Molly Masters, J.A. Boles, Jennifer M. Thomson
Software Mentions: 1
Published: over 3 years ago
10.1186/1471-2164-15-113
Copy number variations of the extensively amplified Y-linked genes, HSFY and ZNF280BY, in cattle and their association with male reproductive traits in Holstein bullsCited by: 37
Author(s): Xiumei Yue, C.D. Dechow, Ti-Cheng Chang, J. M. Dejarnette, Christopher Marshall, Chuzhao Lei, Wan-Sheng Liu
Software Mentions: 1
Published: over 10 years ago
10.1242/bio.015727
Rac1 controls epithelial tube length through the apical secretion and polarity pathwaysCited by: 9
Author(s): Kévin Sollier, Helori-Maël Gaudé, François Chartier, Patrick Laprise
Software Mentions: 1
Published: almost 9 years ago
10.1155/2020/4965670
Studying the Role and Molecular Mechanisms of MAP4K3 in Sorafenib Resistance of Hepatocellular CarcinomaCited by: 3
Author(s): Yi Shi, Xiaofei Mo, Simei Hong, Tianbao Li, Baozhen Chen, Gang Chen
Software Mentions: 1
Published: about 4 years ago
10.1186/bcr3677
Breast-related effects of selective estrogen receptor modulators and tissue-selective estrogen complexesCited by: 14
Author(s): Carolyn L. Smith, Richard J. Santen, Barry S. Komm, Sebastián Mirkin
Software Mentions: 1
Published: over 10 years ago
10.1155/2016/4278724
Hepatitis B Awareness and Knowledge in Asian Communities in British ColumbiaCited by: 20
Author(s): Alan Hoi Lun Yau, Jo‐Ann Ford, P. Kwan, Jessica Ip Chan, Queenie Choo, Tim K. Lee, Willie Kwong, Alan Huang, Eric M. Yoshida
Software Mentions: 1
Published: almost 9 years ago
10.1002/cam4.2821
Density of breast: An independent risk factor for developing breast cancer, a prospective study at two premium breast centersCited by: 0
Author(s): Chia Hwee Lo, Xin Ying Chai, Shirley Shy Wen Ting, Sze Chao Ang, Xin Lin Chin, Lay Teng Tan, Peeroo Saania, Tuan Nur’ Azmah Tuan Mat, Seniyah Mat Sikin, Anil Gandhi
Software Mentions: 1
Published: over 4 years ago
10.1186/s13041-014-0054-1
The Amyloid Precursor Protein is rapidly transported from the Golgi apparatus to the lysosome and where it is processed into beta-amyloidCited by: 62
Author(s): Joshua H. K. Tam, Claudia Seah, Stephen Pasternak
Software Mentions: 1
Published: over 10 years ago
10.1089/vbz.2018.2431
Arthropod Containment Guidelines, Version 3.2Cited by: 24
Author(s): American Committee of Medical Entom
Software Mentions: 1
Published: over 5 years ago
10.4103/wjtcm.wjtcm_33_19
Aristolochic acid-induced genotoxicity and toxicogenomic changes in rodentsCited by: 15
Author(s): Xi Lin Li, Xiao Guo, Hairong Wang, Tao Chen, Nan Mei
Software Mentions: 1
Published: almost 5 years ago
10.1007/s00345-020-03383-w
Consultation on kidney stones, Copenhagen 2019: lithotripsy in percutaneous nephrolithotomyCited by: 17
Author(s): Tomas Axelsson, Cecilia Maria Cracco, Mahesh Desai, Mudhar N. Hasan, Thomas Knoll, Emanuele Montanari, Daniel Pérez-Fentes, Michael Straub, Kay Thomas, James C. Williams, Marianne Brehmer, Palle Jørn Sloth Osther
Software Mentions: 1
Published: over 4 years ago
10.7717/peerj-cs.273
Influence of tweets and diversification on serendipitous research paper recommender systemsCited by: 4
Author(s): Chifumi Nishioka, Jörn Hauke, Ansgar Scherp
Software Mentions: 1
Published: over 4 years ago