Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0251032

https://doi.org/10.1371/journal.pone.0251032

Unsupervised tensor decomposition-based method to extract candidate transcription factors as histone modification bookmarks in post-mitotic transcriptional reactivation

Cited by: 2
Author(s): Y-h. Taguchi, Turki Turki
Published: over 3 years ago

Software Mentions 8

bioconductor: ChIPComp
Quantitative comparison of multiple ChIP-seq datasets
Papers that mentioned: 3
bioconductor: csaw
ChIP-Seq Analysis with Windows
Papers that mentioned: 29
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: DiffBind
Differential Binding Analysis of ChIP-Seq Peak Data
Papers that mentioned: 217
cran: Select
Determines Species Probabilities Based on Functional Traits
Papers that mentioned: 64
pypi: MACS
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
pypi: MAnorm
A robust model for quantitative comparison of ChIP-Seq data sets
Papers that mentioned: 42