cran: jsonlite | Projects | Ecosyste.ms: Papers

10.1371/journal.pcbi.1007912

bigPint: A Bioconductor visualization package that makes big data pint-sized
Cited by: 3
Author(s): Lindsay Rutter, Dianne Cook
Software Mentions: 47
Published: over 4 years ago

A computational reproducibility study of PLOS ONE articles featuring longitudinal data analyses
Cited by: 15
Author(s): Heidi Seibold, Severin Czerny, Siona Decke, Roman Dieterle, Thomas Eder, Steffen Fohr, Nico Hahn, Rabea Hartmann, Christoph Heindl, Philipp Kopper, Dario Lepke, Verena Loidl, Maximilian Mandl, Sarah Musiol, Jessica Peter, Alexander Piehler, Elio Rojas, Stefanie Schmid, Hannah Schmidt, Melissa Schmoll, Lennart Schneider, Xiao-Yin To, Viêt Anh Tran, Antje Völker, Moritz Wagner, Joshua Wagner, Maria Waize, Hannah Wecker, Rui Yang, Simone Zellner, Malte Nalenz
Software Mentions: 46
Published: about 3 years ago

10.1186/s12859-017-1905-4

ADAGE signature analysis: differential expression analysis with data-defined gene sets
Cited by: 15
Author(s): Jie Tan, Matthew Huyck, Dongbo Hu, René A. Zelaya, Deborah A. Hogan, Casey S. Greene
Software Mentions: 25
Published: almost 7 years ago

10.7554/eLife.70086

Gaps in global wildlife trade monitoring leave amphibians vulnerable
Cited by: 22
Author(s): Alice C. Hughes, Benjamin Michael Marshall, Colin Thomas Strine
Software Mentions: 23
Published: about 3 years ago

10.1037/rev0000169

Simultaneous consonance in music perception and composition.
Cited by: 47
Author(s): Peter M. C. Harrison, Marcus T. Pearce
Software Mentions: 23
Published: over 4 years ago

10.3390/ijms21186652

Identification of Gastritis Subtypes by Convolutional Neuronal Networks on Histological Images of Antrum and Corpus Biopsies
Cited by: 15
Author(s): Georg Steinbuß, Katharina Kriegsmann, Mark Kriegsmann
Software Mentions: 19
Published: about 4 years ago

10.3390/ijms22105385

Deep Learning in Pancreatic Tissue: Identification of Anatomical Structures, Pancreatic Intraepithelial Neoplasia, and Ductal Adenocarcinoma
Cited by: 15
Author(s): Mark Kriegsmann, Katharina Kriegsmann, Georg Steinbuß, Christiane Zgorzelski, Anne Kraft, Matthias M. Gaida
Software Mentions: 18
Published: over 3 years ago

10.3390/cancers13102419

Deep Learning for the Classification of Non-Hodgkin Lymphoma on Histopathological Images
Cited by: 16
Author(s): Georg Steinbuß, Mark Kriegsmann, Christiane Zgorzelski, Alexander Brobeil, Benjamin Goeppert, Sascha Dietrich, Gunhild Mechtersheimer, Katharina Kriegsmann
Software Mentions: 18
Published: over 3 years ago

10.3389/fpsyg.2021.627561

Automatic Facial Expression Recognition in Standardized and Non-standardized Emotional Expressions
Cited by: 41
Author(s): Theresa Küntzler, T. Tim A. Höfling, Georg W. Alpers
Software Mentions: 16
Published: over 3 years ago

10.1186/s12920-017-0261-6

CVE: an R package for interactive variant prioritisation in precision oncology
Cited by: 6
Author(s): Andreas Möck, Suzanne Murphy, James A. Morris, Francesco Marass, Nitzan Rosenfeld, Charles E. Massie
Software Mentions: 14
Published: over 7 years ago

10.1186/s12967-017-1285-6

In silico prediction of novel therapeutic targets using gene–disease association data
Cited by: 79
Author(s): Enrico Ferrero, Ian Dunham, Philippe Sanséau
Software Mentions: 12
Published: about 7 years ago

10.1038/s41598-017-02464-y

UROPA: a tool for Universal RObust Peak Annotation
Cited by: 38
Author(s): Maria Kondili, Annika Fust, Jens Preussner, Carsten Kuenne, Thomas Braun, Mario Looso
Software Mentions: 11
Published: over 7 years ago

10.1371/journal.pone.0131656

iCOSSY: An Online Tool for Context-Specific Subnetwork Discovery from Gene Expression Data
Cited by: 1
Author(s): Ashis Saha, Minji Jeon, Aik Choon Tan, Jaewoo Kang
Software Mentions: 10
Published: about 9 years ago

10.1007/s11306-018-1356-6

A Python library for FAIRer access and deposition to the Metabolomics Workbench Data Repository
Cited by: 8
Author(s): Andrey Smelter, Hunter N. B. Moseley
Software Mentions: 9
Published: over 6 years ago

10.3389/fpsyg.2018.02327

Use or Consequences: Probing the Cognitive Difference Between Two Measures of Divergent Thinking
Cited by: 44
Author(s): Richard W. Hass, Roger E. Beaty
Software Mentions: 9
Published: almost 6 years ago

10.1371/journal.pone.0242142

'Tiny numbers' are actually tiny: Evidence from gestures in the TV News Archive
Cited by: 13
Author(s): Greg Woodin, Bodo Winter, Marcus Perlman, Jeannette Littlemore, Teenie Matlock
Software Mentions: 8
Published: almost 4 years ago

10.1186/s12859-017-1580-5

A fast and efficient python library for interfacing with the Biological Magnetic Resonance Data Bank
Cited by: 8
Author(s): Andrey Smelter, Morgan Astra, Hunter N. B. Moseley
Software Mentions: 8
Published: over 7 years ago

10.1111/acel.12819

Gene expression-based drug repurposing to target aging
Cited by: 53
Author(s): Handan Melike Dönertaş, Matías Fuentealba, Linda Partridge, Janet M. Thornton
Software Mentions: 7
Published: about 6 years ago

10.1371/journal.pbio.3000301

Proteome-wide analysis of chaperone-mediated autophagy targeting motifs
Cited by: 125
Author(s): Philipp Kirchner, Mathieu Bourdenx, Julio Madrigal‐Matute, Simoni Tiano, Antonio Díaz, Boris Bartholdy, Britta Will, Ana María Cuervo
Software Mentions: 7
Published: over 5 years ago

10.1093/database/baw160

FirebrowseR: an R client to the Broad Institute’s Firehose Pipeline
Cited by: 123
Author(s): Mario C. Deng, Johannes Brägelmann, Ivan Kryukov, Nuno Saraiva-Agostinho, Sven Perner
Software Mentions: 7
Published: over 7 years ago

10.1186/s12942-019-0177-9

Using data from online geocoding services for the assessment of environmental obesogenic factors: a feasibility study
Cited by: 13
Author(s): Maximilian Präger, Christoph Kurz, Julian Böhm, Michael Laxy, Werner Maier
Software Mentions: 7
Published: over 5 years ago

10.2196/11753

Description of Cardiological Apps From the German App Store: Semiautomated Retrospective App Store Analysis
Cited by: 21
Author(s): Urs‐Vito Albrecht, Gerd Hasenfuß, Ute von Jan
Software Mentions: 7
Published: almost 6 years ago

10.1177/1176934319899384

Phylotastic: Improving Access to Tree-of-Life Knowledge With Flexible, on-the-Fly Delivery of Trees
Cited by: 2
Author(s): Van Duc Nguyen, Thanh Hai Nguyen, Abu Saleh Md Tayeen, Haywood Dail Laughinghouse, Luna L. Sánchez‐Reyes, Jodie Wiggins, Enrico Pontelli, Dmitry Mozzherin, Brian C. O’Meara, Arlin Stoltzfus
Software Mentions: 5
Published: over 4 years ago

10.1093/jamiaopen/ooab065

P2T2: Protein Panoramic annoTation Tool for the interpretation of protein coding genetic variants
Cited by: 0
Author(s): Elias DeVoe, Gavin R. Oliver, Roman M. Zenka, Patrick R. Blackburn, Margot A. Cousin, Nicole J. Boczek, Jean-Pierre A. Kocher, Raúl Urrutia, Eric W. Klee, Michael T. Zimmermann
Software Mentions: 5
Published: about 3 years ago

10.3389/fgene.2019.00356

Simplicity DiffExpress: A Bespoke Cloud-Based Interface for RNA-seq Differential Expression Modeling and Analysis
Cited by: 1
Author(s): Cintia Palu, Marcelo Ribeiro-Alves, Yanxin Wu, Brendan Lawlor, Pavel V. Baranov, Brian Kelly, Paul Walsh
Software Mentions: 5
Published: over 5 years ago

10.12688/f1000research.9357.2

Genomic variant annotation workflow for clinical applications
Cited by: 9
Author(s): Thomas Thurnherr, Franziska Singer, Daniel J. Stekhoven, Niko Beerenwinkel
Software Mentions: 5
Published: almost 8 years ago

10.3897/BDJ.7.e31817

A benchmark dataset of herbarium specimen images with label data
Cited by: 23
Author(s): Mathias Dillen, Quentin Groom, Simon Chagnoux, Anton Güntsch, Alex Hardisty, Elspeth Haston, Laurence Livermore, Veljo Runnel, Leif Schulman, Luc Willemse, Zhipeng Wu, Sarah Phillips
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0186118

Finding the signal in the noise: Could social media be utilized for early hospital notification of multiple casualty events?
Cited by: 10
Author(s): Rachael A. Callcut, Sara Moore, Glenn K. Wakam, Alan Hubbard, Mitchell J. Cohen
Software Mentions: 4
Published: almost 7 years ago

10.7717/peerj.1487

De novo clustering methods outperform reference-based methods for assigning 16S rRNA gene sequences to operational taxonomic units
Cited by: 224
Author(s): Sarah L. Westcott, Patrick D. Schloss
Software Mentions: 4
Published: almost 9 years ago

10.1038/s41598-021-87127-9

Prevalence of small for gestational age infants in 21 cities in China, 2014–2019
Cited by: 12
Author(s): He Hui, Huazhang Miao, Liang Zhou, Ye Zhang, Wei Jiang, Zhi Deng, Tang Jing, Guocheng Liu, Xiaodong Luo
Software Mentions: 3
Published: over 3 years ago

10.2196/mhealth.5397

Survalytics: An Open-Source Cloud-Integrated Experience Sampling, Survey, and Analytics and Metadata Collection Module for Android Operating System Apps
Cited by: 14
Author(s): Vikas N O’Reilly-Shah, Sean Mackey
Software Mentions: 3
Published: over 8 years ago

10.1242/dev.196097

Planarian Anatomy Ontology: a resource to connect data within and across experimental platforms
Cited by: 9
Author(s): Stephanie H. Nowotarski, Erin L Davies, Sofia Robb, E. J. Ross, Nicolas Matentzoglu, Viraj Doddihal, Mol Mir, Melainia McClain, Alejandro Sánchez Alvarado
Software Mentions: 3
Published: about 3 years ago

10.3390/ijms21239029

An Automated Functional Annotation Pipeline That Rapidly Prioritizes Clinically Relevant Genes for Autism Spectrum Disorder
Cited by: 1
Author(s): Olivia J. Veatch, Merlin G. Butler, Sarah H. Elsea, Beth A. Malow, James S. Sutcliffe, Jason H. Moore
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12859-019-3021-0

VOLARE: visual analysis of disease-associated microbiome-immune system interplay
Cited by: 5
Author(s): Janet Siebert, C. Preston Neff, Jennifer M. Schneider, Emilie Regner, Neha Ohri, Kristine A. Kuhn, Brent E. Palmer, Catherine Lozupone, Carsten Görg
Software Mentions: 2
Published: about 5 years ago

10.2196/publichealth.7001

Online Reviews as Health Data: Examining the Association Between Availability of Health Care Services and Patient Star Ratings Exemplified by the Yelp Academic Dataset
Cited by: 9
Author(s): Nam Tran, Joon Lee
Software Mentions: 1
Published: about 7 years ago

10.3390/data3010004

CoeViz: A Web-Based Integrative Platform for Interactive Visualization of Large Similarity and Distance Matrices
Cited by: 6
Author(s): Frazier N. Baker, Aleksey Porollo
Software Mentions: 1
Published: over 6 years ago

Ecosyste.ms: Papers

Projects: cran: jsonlite

Papers Mentioning jsonlite 36