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Papers: 10.1371/journal.pone.0131656

https://doi.org/10.1371/journal.pone.0131656

iCOSSY: An Online Tool for Context-Specific Subnetwork Discovery from Gene Expression Data

Cited by: 1
Author(s): Ashis Saha, Minji Jeon, Aik Choon Tan, Jaewoo Kang
Published: about 11 years ago

Software Mentions 10

bioconductor: biomaRt
Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446
Very Likely Science (100)
bioconductor: KEGGgraph
KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor
Papers that mentioned: 39
Very Likely Science (100)
bioconductor: SPIA
Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbations
Papers that mentioned: 155
Very Likely Science (100)
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
Very Likely Science (100)
cran: jsonlite
A Simple and Robust JSON Parser and Generator for R
Papers that mentioned: 36
Very Likely Science (83)
cran: plyr
Tools for Splitting, Applying and Combining Data
Papers that mentioned: 468
Very Likely Science (100)
cran: Rserve
Binary R server
Papers that mentioned: 35
Very Likely Science (75)
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555
Very Likely Science (100)
pypi: Pathway
Pathway is a data processing framework which takes care of streaming data updates for you.
Papers that mentioned: 827
Very Likely Science (75)
pypi: plyr
UNKNOWN
Papers that mentioned: 468
Very Likely Science (65)