cran: Rserve | Projects | Ecosyste.ms: Papers

10.1186/1471-2105-16-S11-S2

VisRseq: R-based visual framework for analysis of sequencing data
Cited by: 59
Author(s): Hamid Younesy, Torsten B. Möller, Matthew C. Lorincz, Mehdi Karimi, Steven J.M. Jones
Software Mentions: 15
Published: over 9 years ago

10.1186/1471-2105-10-74

RGG: A general GUI Framework for R scripts
Cited by: 7
Author(s): Ilhami Visne, Erkan Dilaveroǧlu, Klemens Vierlinger, Martin Lauss, Ahmet Yıldız, Andreas Weinhäusel, Christa Noehammer, Friedrich Leisch, Albert Kriegner
Software Mentions: 11
Published: over 15 years ago

10.1371/journal.pone.0131656

iCOSSY: An Online Tool for Context-Specific Subnetwork Discovery from Gene Expression Data
Cited by: 1
Author(s): Ashis Saha, Minji Jeon, Aik Choon Tan, Jaewoo Kang
Software Mentions: 10
Published: over 9 years ago

10.1186/s13029-015-0043-5

CyNetworkBMA: a Cytoscape app for inferring gene regulatory networks
Cited by: 5
Author(s): Maciej Fronczuk, Adrian E. Raftery, Ka Yee Yeung
Software Mentions: 8
Published: about 9 years ago

10.12688/f1000research.2-192.v2

Cyrface: An interface from Cytoscape to R that provides a user interface to R packages
Cited by: 3
Author(s): Emanuel Gonçalvès, Franz Mirlach, Julio Sáez-Rodríguez
Software Mentions: 8
Published: over 10 years ago

10.1186/gb-2008-9-7-r118

MeV+R: using MeV as a graphical user interface for Bioconductor applications in microarray analysis
Cited by: 86
Author(s): Vu T. Chu, Raphaël Gottardo, Adrian E. Raftery, Roger E. Bumgarner, Ka Yee Yeung
Software Mentions: 7
Published: almost 17 years ago

10.1371/journal.pone.0152686

GUIdock: Using Docker Containers with a Common Graphics User Interface to Address the Reproducibility of Research
Cited by: 42
Author(s): Ling‐Hong Hung, Daniel Kristiyanto, Sung Bong Lee, Ka Yee Yeung
Software Mentions: 6
Published: over 8 years ago

10.1186/1471-2105-9-493

EMAAS: An extensible grid-based Rich Internet Application for microarray data analysis and management
Cited by: 13
Author(s): Geraint Barton, James Abbott, Norie Chiba, Daniel Huang, Yanyan Huang, Marko Krznarić, J. Mack-Smith, Ammar Saleem, Brad T. Sherman, Brijesh K. Tiwari, Christopher Tomlinson, Timothy J. Aitman, John Darlington, Laurence Gamé, Michael J.E. Sternberg, Sarah Butcher
Software Mentions: 6
Published: almost 16 years ago

10.1186/1755-8794-3-21

SEURAT: Visual analytics for the integrated analysis of microarray data
Cited by: 63
Author(s): Alexander Gribov, Martin Sill, Sonja C. Lück, Frank G. Rücker, Konstanze Döhner, Lars Bullinger, Axel Benner, Antony Unwin
Software Mentions: 5
Published: over 14 years ago

10.1007/978-1-4939-9074-0_25

Sharing Programming Resources Between Bio* Projects
Cited by: 4
Author(s): Raoul Jean Pierre Bonnal, Andy Yates, Naohisa Goto, Laurent Gautier, Scooter Willis, Christopher J. Fields, Toshiaki Katayama, Pjotr Prins
Software Mentions: 4
Published: almost 6 years ago

10.1016/j.mex.2021.101330

Automated measurement of the spontaneous tail coiling of zebrafish embryos as a sensitive behavior endpoint using a workflow in KNIME
Cited by: 9
Author(s): Afolarin O. Ogungbemi, Elisabet Teixidó, R Massei, Stefan Scholz, Eberhard Küster
Software Mentions: 4
Published: almost 4 years ago

10.1186/s40168-018-0460-1

Flexible metagenome analysis using the MGX framework
Cited by: 18
Author(s): Sebastian Jaenicke, Stefan P. Albaum, Patrick Blumenkamp, Burkhard Linke, Jens Stoye, Alexander Goesmann
Software Mentions: 4
Published: over 6 years ago

10.3390/s19092047

Design and Implementation of Cloud Analytics-Assisted Smart Power Meters Considering Advanced Artificial Intelligence as Edge Analytics in Demand-Side Management for Smart Homes
Cited by: 105
Author(s): Yung-Yao Chen, Yu‐Hsiu Lin, Chia-Ching Kung, Ming-Feng Chung, I-Hsuan Yen
Software Mentions: 4
Published: over 5 years ago

10.1186/1471-2164-14-608

Predicting whole genome protein interaction networks from primary sequence data in model and non-model organisms using ENTS
Cited by: 26
Author(s): Eli Rodgers-Melnick, Mark V. Culp, Stephen P. DiFazio
Software Mentions: 3
Published: about 11 years ago

10.12688/f1000research.9050.2

CoNet app: inference of biological association networks using Cytoscape
Cited by: 238
Author(s): Karoline Faust, Jeroen Raes
Software Mentions: 3
Published: about 8 years ago

10.1186/s12864-015-1785-9

MGFM: a novel tool for detection of tissue and cell specific marker genes from microarray gene expression data
Cited by: 11
Author(s): Khadija El Amrani, Harald Stachelscheid, Fritz Lekschas, Armin Kurtz, Miguel A. Andrade‐Navarro
Software Mentions: 3
Published: about 9 years ago

10.1186/s12859-017-1575-2

ClonoCalc and ClonoPlot: immune repertoire analysis from raw files to publication figures with graphical user interface
Cited by: 16
Author(s): Anke Fähnrich, Moritz Krebbel, Normann Decker, Martin Leucker, Felix D. Lange, Kathrin Kalies, Steffen Möller
Software Mentions: 3
Published: over 7 years ago

10.1093/bioinformatics/bts656

DvD: An R/Cytoscape pipeline for drug repurposing using public repositories of gene expression data
Cited by: 62
Author(s): Clare Pacini, Francesco Iorio, Emanuel Gonçalvès, Murat Iskar, Thomas Klabunde, Peer Bork, Julio Sáez-Rodríguez
Software Mentions: 3
Published: about 12 years ago

10.1534/g3.117.039693

asymptoticMK: A Web-Based Tool for the Asymptotic McDonald–Kreitman Test
Cited by: 31
Author(s): Benjamin C. Haller, Philipp W. Messer
Software Mentions: 3
Published: over 7 years ago

10.7717/peerj.755

Requirements for data integration platforms in biomedical research networks: a reference model
Cited by: 4
Author(s): Matthias Ganzinger, Petra Knaup
Software Mentions: 2
Published: almost 10 years ago

10.1186/1471-2105-11-185

web cellHTS2: A web-application for the analysis of high-throughput screening data
Cited by: 60
Author(s): Oliver Pelz, Moritz Gilsdorf, Michael Boutros
Software Mentions: 2
Published: over 14 years ago

10.1007/s10519-015-9723-9

Heritability, SNP- and Gene-Based Analyses of Cannabis Use Initiation and Age at Onset
Cited by: 24
Author(s): Camelia C. Minică, Conor V. Dolan, Jouke‐Jan Hottenga, René Pool, Iryna O. Fedko, Hamdi Mbarek, Charlotte Huppertz, Meike Bartels, Dorret I. Boomsma, Jacqueline M. Vink
Software Mentions: 2
Published: over 9 years ago

10.1038/srep11556

Genome-wide Association Study on Platinum-induced Hepatotoxicity in Non-Small Cell Lung Cancer Patients
Cited by: 20
Author(s): Shougen Cao, Cheng Wang, Hongxia Ma, Rong Yin, Meng Zhu, Wei Shen, Juncheng Dai, Yongqian Shu, Lin Xu, Zhibin Hu, Hongbing Shen
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0051862

Cutoff Finder: A Comprehensive and Straightforward Web Application Enabling Rapid Biomarker Cutoff Optimization
Cited by: 927
Author(s): Jan Budczies, Frederick Klauschen, Bruno Valentin Sinn, Balázs Györffy, Wolfgang Schmitt, Silvia Darb‐Esfahani, Carsten Denkert
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0087397

BiNA: A Visual Analytics Tool for Biological Network Data
Cited by: 32
Author(s): Andreas Gerasch, Daniel Faber, Jan Küntzer, Peter Niermann, Oliver Kohlbacher, Hans‐Peter Lenhof, Michael Kaufmann
Software Mentions: 1
Published: almost 11 years ago

10.3389/fgene.2020.00771

VisTCR: An Interactive Software for T Cell Repertoire Sequencing Data Analysis
Cited by: 6
Author(s): Qingshan Ni, Jianyang Zhang, Zihan Zheng, Gang Chen, Laura S. Christian, Juha Grönholm, Hongliang Yu, Daxue Zhou, Yuan Zhuang, Qi-Jing Li, Ying Wan
Software Mentions: 1
Published: over 4 years ago

10.3389/fonc.2020.00315

OSeac: An Online Survival Analysis Tool for Esophageal Adenocarcinoma
Cited by: 4
Author(s): Qiang Wang, Zhongyi Yan, Lite Ge, Ning Li, Mengsi Yang, Xiaoxiao Sun, Longxiang Xie, Guosen Zhang, Wan Zhu, Yunlong Wang, Yongqiang Li, Xianzhe Li, Xiangqian Guo
Software Mentions: 1
Published: over 4 years ago

10.3389/fphar.2020.00875

OSlihc: An Online Prognostic Biomarker Analysis Tool for Hepatocellular Carcinoma
Cited by: 9
Author(s): Yang An, Qiang Wang, Guosen Zhang, Fengjie Sun, Lu Zhang, Haojie Li, Yingkun Li, Yanyu Peng, Wan Zhu, Shaoping Ji, Xiangqian Guo
Software Mentions: 1
Published: over 4 years ago

10.3389/fphar.2013.00038

lazar: a modular predictive toxicology framework
Cited by: 114
Author(s): Andreas Maunz, Martin Gütlein, Micha Rautenberg, David Vorgrimmler, Denis Gebele, Christoph Helma
Software Mentions: 1
Published: almost 12 years ago

10.1093/aob/mcab065

Metabolomic analysis reveals reliance on secondary plant metabolites to facilitate carnivory in the Cape sundew,<i>Drosera capensis</i>
Cited by: 7
Author(s): Christopher R Hatcher, Ulf Sommer, Liam M. Heaney, Jonathan Millett
Software Mentions: 1
Published: over 3 years ago

10.1186/1756-0500-2-138

Using R in Taverna: RShell v1.2
Cited by: 8
Author(s): Ingo Wassink, Han Rauwerda, Pieter Neerincx, P.E. van der Vet, Timo M. Breit, Jack A. M. Leunissen, Anton Nijholt
Software Mentions: 1
Published: almost 16 years ago

10.1186/s12859-016-1179-2

SHIVA - a web application for drug resistance and tropism testing in HIV
Cited by: 26
Author(s): Mona Riemenschneider, Thomas Hummel, Dominik Heider
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-017-05224-0

HDNetDB: A Molecular Interaction Database for Network-Oriented Investigations into Huntington’s Disease
Cited by: 20
Author(s): Ravi Kiran Reddy Kalathur, José P. Pinto, Biswanath Sahoo, Gautam Chaurasia, Matthias E. Futschik
Software Mentions: 1
Published: over 7 years ago

10.1186/1472-6947-9-36

FluDetWeb: an interactive web-based system for the early detection of the onset of influenza epidemics
Cited by: 6
Author(s): David Conesa, Antonio López‐Quílez, Miguel A. Martínez-Beneito, María Teresa Miralles, Francisco Verdejo
Software Mentions: 1
Published: over 15 years ago

10.1155/2011/861705

ElectroMagnetoEncephalography Software: Overview and Integration with Other EEG/MEG Toolboxes
Cited by: 195
Author(s): Peter Peyk, Andrea De Cesarei, Markus Junghöfer
Software Mentions: 1
Published: almost 14 years ago

Ecosyste.ms: Papers

Projects: cran: Rserve

Papers Mentioning Rserve 35