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Papers: 10.1038/s41598-017-02464-y

https://doi.org/10.1038/s41598-017-02464-y

UROPA: a tool for Universal RObust Peak Annotation

Cited by: 38
Author(s): Maria Kondili, Annika Fust, Jens Preussner, Carsten Kuenne, Thomas Braun, Mario Looso
Published: over 9 years ago

Software Mentions 11

bioconductor: ChIPpeakAnno
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome ranges
Papers that mentioned: 145
Very Likely Science (76)
bioconductor: TFBSTools
Software Package for Transcription Factor Binding Site (TFBS) Analysis
Papers that mentioned: 33
Very Likely Science (100)
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
Very Likely Science (100)
cran: gplots
Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122
Very Likely Science (85)
cran: gridExtra
Miscellaneous Functions for "Grid" Graphics
Papers that mentioned: 298
Very Likely Science (85)
cran: JASPAR
R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
Papers that mentioned: 1,283
Very Likely Science (75)
cran: jsonlite
A Simple and Robust JSON Parser and Generator for R
Papers that mentioned: 36
Very Likely Science (83)
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
Very Likely Science (100)
cran: VennDiagram
Generate High-Resolution Venn and Euler Plots
Papers that mentioned: 626
Very Likely Science (83)
pypi: deepTools
Useful tools for exploring deep sequencing data.
Papers that mentioned: 435
Very Likely Science (90)
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
Very Likely Science (100)