Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3390/microorganisms9051094

https://doi.org/10.3390/microorganisms9051094

Global Genomic Analysis of SARS-CoV-2 RNA Dependent RNA Polymerase Evolution and Antiviral Drug Resistance

Cited by: 16
Author(s): Alfredo Mari, Tim Roloff, Madlen Stange, Kirstine Kobberøe Søgaard, Erblin Asllanaj, Gerardo Tauriello, Leila T. Alexander, Michael Schweitzer, Karoline Leuzinger, Alexander Gensch, Aurélien Emmanuel Martinez, Julia Bielicki, Hans Pargger, Martin Siegemund, Christian H. Nickel, Roland Bingisser, Michael Osthoff, Stefano Bassetti, Parham Sendi, Manuel Battegay, Catia Marzolini, Helena M. B. Seth-Smith, Torsten Schwede, Hans H. Hirsch, Adrian Egli
Published: over 3 years ago

Software Mentions 27

bioconductor: BiocGenerics
S4 generic functions used in Bioconductor
Papers that mentioned: 15
bioconductor: Biostrings
Efficient manipulation of biological strings
Papers that mentioned: 220
bioconductor: IRanges
Foundation of integer range manipulation in Bioconductor
Papers that mentioned: 62
bioconductor: S4Vectors
Foundation of vector-like and list-like containers in Bioconductor
Papers that mentioned: 7
bioconductor: XVector
Foundation of external vector representation and manipulation in Bioconductor
Papers that mentioned: 3
cran: cowplot
Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Papers that mentioned: 298
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: foreign
Read Data Stored by 'Minitab', 'S', 'SAS', 'SPSS', 'Stata', 'Systat', 'Weka', 'dBase', ...
Papers that mentioned: 94
cran: ggExtra
Add Marginal Histograms to 'ggplot2', and More 'ggplot2' Enhancements
Papers that mentioned: 32
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: ggpubr
'ggplot2' Based Publication Ready Plots
Papers that mentioned: 856
cran: ggspatial
Spatial Data Framework for ggplot2
Papers that mentioned: 24
cran: lubridate
Make Dealing with Dates a Little Easier
Papers that mentioned: 84
cran: maps
Draw Geographical Maps
Papers that mentioned: 137
cran: Matrix
Sparse and Dense Matrix Classes and Methods
Papers that mentioned: 172
cran: reshape2
Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421
cran: rgeos
Interface to Geometry Engine - Open Source ('GEOS')
Papers that mentioned: 144
cran: rnaturalearth
World Map Data from Natural Earth
Papers that mentioned: 44
cran: rnaturalearthdata
World Vector Map Data from Natural Earth Used in 'rnaturalearth'
Papers that mentioned: 9
cran: sf
Simple Features for R
Papers that mentioned: 125
cran: shapefiles
Read and Write ESRI Shapefiles
Papers that mentioned: 5
cran: sp
Classes and Methods for Spatial Data
Papers that mentioned: 258
cran: tidyr
Tidy Messy Data
Papers that mentioned: 321
pypi: maps
Maps: flavors of Python dictionaries
Papers that mentioned: 137
pypi: package
package is a package to package your package
Papers that mentioned: 1,300
pypi: sp
Quickly find out which directories / files are hogging your disk space.
Papers that mentioned: 258
pypi: XVector
Package for XVector API access
Papers that mentioned: 3