Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.59073

https://doi.org/10.7554/eLife.59073

Cited by: 15
Author(s): Krystal A. Orlando, Amber K Douglas, Aierken Abudu, Yemin Wang, Basile Tessier‐Cloutier, Weiping Su, Alec Peters, Larry S. Sherman, Regan P. Moore, Vinh Nguyen, Gian Luca Negri, Shane Colborne, Gregg B. Morin, Friedrich Kommoss, Jessica D. Lang, William P.D. Hendricks, Elizabeth A. Raupach, Patrick Pirrotte, David G. Huntsman, Jeffrey M. Trent, Joel S. Parker, Jesse R. Raab, Bernard E. Weissman
Published: over 3 years ago

Software Mentions 9

bioconductor: ChIPpeakAnno
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome ranges
Papers that mentioned: 145
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: PECA
Probe-level Expression Change Averaging
Papers that mentioned: 17
bioconductor: singscore
Rank-based single-sample gene set scoring method
Papers that mentioned: 13
bioconductor: tximport
Import and summarize transcript-level estimates for transcript- and gene-level analysis
Papers that mentioned: 367
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: MACS
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233
pypi: picard
The next generation MusicBrainz tagger
Papers that mentioned: 243
pypi: salmon
A simple metric collector with alerts.
Papers that mentioned: 36