Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: PECA
https://packages.ecosyste.ms/registries/bioconductor.org/packages/PECA
Probe-level Expression Change Averaging
1 version
Latest release: about 1 year ago
1 dependent package
16,393 downloads total
Papers Mentioning PECA 17
10.7554/eLife.59073
Re-expression of SMARCA4/BRG1 in small cell carcinoma of ovary, hypercalcemic type (SCCOHT) promotes an epithelial-like gene signature through an AP-1-dependent mechanismCited by: 15
Author(s): Krystal A. Orlando, Amber K Douglas, Aierken Abudu, Yemin Wang, Basile Tessier‐Cloutier, Weiping Su, Alec Peters, Larry S. Sherman, Regan P. Moore, Vinh Nguyen, Gian Luca Negri, Shane Colborne, Gregg B. Morin, Friedrich Kommoss, Jessica D. Lang, William P.D. Hendricks, Elizabeth A. Raupach, Patrick Pirrotte, David G. Huntsman, Jeffrey M. Trent, Joel S. Parker, Jesse R. Raab, Bernard E. Weissman
Software Mentions: 9
Published: almost 4 years ago
10.7554/eLife.39054
New insights into the cellular temporal response to proteostatic stressCited by: 40
Author(s): Justin Rendleman, Zhe Cheng, Shuvadeep Maity, Nicolai Kastelic, Mathias Munschauer, Kristina Allgoewer, Guoshou Teo, Yun Bin Matteo Zhang, Amy Lei, Brian J. Parker, Markus Landthaler, Lindsay Freeberg, Scott Kuersten, Hyungwon Choi, Christine Vogel
Software Mentions: 5
Published: about 6 years ago
10.3390/proteomes8030015
Precursor Intensity-Based Label-Free Quantification Software Tools for Proteomic and Multi-Omic Analysis within the Galaxy PlatformCited by: 9
Author(s): Subina Mehta, Caleb Easterly, Ray Sajulga, Robert Millikin, Andrea Argentini, Ignacio Eguinoa, Lennart Martens, Michael R. Shortreed, Lloyd M. Smith, Thomas McGowan, Praveen Kumar, James E. Johnson, Timothy J. Griffin, Pratik Jagtap
Software Mentions: 5
Published: over 4 years ago
10.1038/s41598-017-05949-y
Enhanced differential expression statistics for data-independent acquisition proteomicsCited by: 29
Author(s): Tomi Suomi, Laura L. Elo
Software Mentions: 4
Published: over 7 years ago
10.1371/journal.ppat.1002861
Exon Level Transcriptomic Profiling of HIV-1-Infected CD4+ T Cells Reveals Virus-Induced Genes and Host Environment Favorable for Viral ReplicationCited by: 46
Author(s): Michaël Imbeault, Katia Giguère, Michel Ouellet, Michel J. Tremblay
Software Mentions: 3
Published: over 12 years ago
10.15252/msb.20156423
Differential dynamics of the mammalian <scp>mRNA</scp> and protein expression response to misfolding stressCited by: 140
Author(s): Zhe Cheng, Guoshou Teo, Sabrina Krueger, Tara M. Rock, Hiromi W. L. Koh, Hyungwon Choi, Christine Vogel
Software Mentions: 2
Published: almost 9 years ago
10.1038/srep34949
Quantitative Profiling of Single Formalin Fixed Tumour Sections: proteomics for translational researchCited by: 90
Author(s): Christopher S. Hughes, Melissa K. McConechy, Dawn R. Cochrane, Tayyebeh M. Nazeran, Anthony N. Karnezis, David G. Huntsman, Gregg B. Morin
Software Mentions: 2
Published: about 8 years ago
10.1074/mcp.MR118.001246
Exploiting Interdata Relationships in Next-generation Proteomics AnalysisCited by: 38
Author(s): Burcu Vitrinel, Hiromi W. L. Koh, Funda M Kar, Shuvadeep Maity, Justin Rendleman, Hyungwon Choi, Christine Vogel
Software Mentions: 2
Published: over 5 years ago
10.1016/j.celrep.2019.05.041
Quantitative Interactomics in Primary T Cells Provides a Rationale for Concomitant PD-1 and BTLA Coinhibitor Blockade in Cancer ImmunotherapyCited by: 90
Author(s): Javier Celis-Gutierrez, Peter Blattmann, Yunhao Zhai, Nicolas Jarmuzynski, Kilian Ruminski, Claude Grégoire, Youcef Ounoughene, Frédéric Di Fiore, Ruedi Aebersold, Romain Roncagalli, Matthias Gstaiger, Bernard Malissen
Software Mentions: 2
Published: over 5 years ago
10.1038/s42003-021-01970-0
hReg-CNCC reconstructs a regulatory network in human cranial neural crest cells and annotates variants in a developmental contextCited by: 9
Author(s): Zhanying Feng, Zhana Duren, Zhenzhen Xiong, Sijia Wang, Fan Liu, Wing Hung Wong, Yong Wang
Software Mentions: 1
Published: over 3 years ago
10.1186/s12913-020-05398-w
A Pacific needs analysis model: a proposed methodology for assessing the needs of facility-based emergency care in the Pacific regionCited by: 1
Author(s): Georgina Phillips, Kathryn Bowman, Trina Sale, Gerard O’Reilly
Software Mentions: 1
Published: over 4 years ago
10.1186/s40170-017-0167-y
HIF prolyl hydroxylase PHD3 regulates translational machinery and glucose metabolism in clear cell renal cell carcinomaCited by: 23
Author(s): Petra Miikkulainen, Heidi Högel, Krista Rantanen, Tomi Suomi, Petri Kouvonen, Laura L. Elo, Panu Jaakkola
Software Mentions: 1
Published: over 7 years ago
10.1074/mcp.R120.002190
Proteome Turnover in the Spotlight: Approaches, Applications, and PerspectivesCited by: 54
Author(s): Alison B. Ross, Julian D. Langer, Marko Jovanović
Software Mentions: 1
Published: almost 4 years ago
10.15252/msb.20156720
The interdependence of transcript and protein abundance: new data–new complexitiesCited by: 27
Author(s): Yansheng Liu, Ruedi Aebersold
Software Mentions: 1
Published: almost 9 years ago
10.1186/1471-2148-7-81
In silico identification of functional divergence between the multiple groEL gene paralogs in ChlamydiaeCited by: 31
Author(s): David J. McNally, Mario A. Fares
Software Mentions: 1
Published: almost 18 years ago
10.3390/s19153283
Performance Enriching Channel Allocation Algorithm for Vehicle-to-Vehicle City, Highway and Rural NetworkCited by: 10
Author(s): Mohammed Abdulhakim Al-Absi, Ahmed Abdulhakim Al-Absi, Hoon Jae Lee
Software Mentions: 1
Published: over 5 years ago
10.3390/s21144935
Secure and Efficient High Throughput Medium Access Control for Vehicular Ad-Hoc NetworkCited by: 5
Author(s): Mohammed Abdulhakim Al-Absi, Ahmed Abdulhakim Al-Absi, Rui Fu, Kihwan Kim, Young-Sil Lee, Byung-Gook Lee, Sang-Gon Lee, Hoon Jae Lee
Software Mentions: 1
Published: over 3 years ago