Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-018-2435-4

https://doi.org/10.1186/s12859-018-2435-4

Single sample scoring of molecular phenotypes

Cited by: 230
Author(s): Momeneh Foroutan, Dharmesh D. Bhuva, Ruqian Lyu, Kristy Horan, Joseph Cursons, Melissa J. Davis
Published: about 6 years ago

Software Mentions 7

bioconductor: edgeR

Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568

bioconductor: GSVA

Gene Set Variation Analysis for microarray and RNA-seq data
Papers that mentioned: 893

bioconductor: singscore

Rank-based single-sample gene set scoring method
Papers that mentioned: 13

cran: ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441

cran: plotly

Create Interactive Web Graphics via 'plotly.js'
Papers that mentioned: 163

pypi: GSVA

Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
Papers that mentioned: 893

pypi: plotly

An open-source, interactive data visualization library for Python
Papers that mentioned: 163