Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12879-020-05598-z

https://doi.org/10.1186/s12879-020-05598-z

Comparing tuberculosis gene signatures in malnourished individuals using the TBSignatureProfiler

Cited by: 9
Author(s): W. Evan Johnson, Aubrey Odom, Chelsie Cintron, Mutharaj Muthaiah, Selby Knudsen, Noyal Mariya Joseph, Senbagavalli Prakash Babu, Subitha Lakshminarayanan, D. Graham Jenkins, Yue Zhao, Ethel Nankya, C. Robert Horsburgh, Gautam Roy, Jerrold J. Ellner, Sonali Sarkar, Padmini Salgame, Natasha S. Hochberg
Published: almost 4 years ago

Software Mentions 6

bioconductor: ASSIGN
Adaptive Signature Selection and InteGratioN (ASSIGN)
Papers that mentioned: 54
bioconductor: GSVA
Gene Set Variation Analysis for microarray and RNA-seq data
Papers that mentioned: 893
bioconductor: singscore
Rank-based single-sample gene set scoring method
Papers that mentioned: 13
bioconductor: TBSignatureProfiler
Profile RNA-Seq Data Using TB Pathway Signatures
Papers that mentioned: 2
pypi: GSVA
Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
Papers that mentioned: 893
pypi: vignette
Library to create FreeDesktop-compatible thumbnails
Papers that mentioned: 7