bioconductor: ASSIGN | Projects | Ecosyste.ms: Papers

10.1186/s12920-015-0121-1

Integrating microbial and host transcriptomics to characterize asthma-associated microbial communities
Cited by: 52
Author(s): Eduardo Castro-Nallar, Ying Shen, Robert J. Freishtat, Marcos Pérez‐Losada, Solaiappan Manimaran, Gang Lv, W. Evan Johnson, Keith A. Crandall
Software Mentions: 12
Published: over 9 years ago

10.1186/s12879-020-05598-z

Comparing tuberculosis gene signatures in malnourished individuals using the TBSignatureProfiler
Cited by: 9
Author(s): W. Evan Johnson, Aubrey Odom, Chelsie Cintron, Mutharaj Muthaiah, Selby Knudsen, Noyal Mariya Joseph, Senbagavalli Prakash Babu, Subitha Lakshminarayanan, D. Graham Jenkins, Yue Zhao, Ethel Nankya, C. Robert Horsburgh, Gautam Roy, Jerrold J. Ellner, Sonali Sarkar, Padmini Salgame, Natasha S. Hochberg
Software Mentions: 6
Published: almost 4 years ago

10.1371/journal.pone.0235758

Development and validation of risk prediction models for multiple cardiovascular diseases and Type 2 diabetes
Cited by: 16
Author(s): Mehrdad Rezaee, Igor Putrenko, Arsia Takeh, Andrea Ganna, Erik Ingelsson
Software Mentions: 5
Published: over 4 years ago

10.1186/s13073-017-0429-x

Activity of distinct growth factor receptor network components in breast tumors uncovers two biologically relevant subtypes
Cited by: 14
Author(s): Mumtahena Rahman, Shelley M. MacNeil, D. Graham Jenkins, Gajendra Shrestha, Sydney Rose Wyatt, Jasmine A. McQuerry, Stephen R. Piccolo, Laura M. Heiser, Joe W. Gray, W. Evan Johnson, Andrea Bild
Software Mentions: 4
Published: over 7 years ago

10.1186/s13601-018-0204-0

5th Pediatric Allergy and Asthma Meeting (PAAM)
Cited by: 8
Author(s):
Software Mentions: 4
Published: over 6 years ago

10.1186/s41512-020-00082-3

Impact of sample size on the stability of risk scores from clinical prediction models: a case study in cardiovascular disease
Cited by: 13
Author(s): Alexander Pate, Richard Emsley, Matthew Sperrin, Glen P. Martin, Tjeerd van Staa
Software Mentions: 4
Published: over 4 years ago

10.1016/j.infsof.2013.05.001

Enforcement of entailment constraints in distributed service-based business processes
Cited by: 13
Author(s): Waldemar Hummer, Patrick Gaubatz, Mark Strembeck, Uwe Zdun, Schahram Dustdar
Software Mentions: 4
Published: about 11 years ago

10.1186/s12859-018-2263-6

Alternative empirical Bayes models for adjusting for batch effects in genomic studies
Cited by: 45
Author(s): Yuqing Zhang, D. Graham Jenkins, Solaiappan Manimaran, W. Evan Johnson
Software Mentions: 3
Published: over 6 years ago

10.1186/s12885-019-6052-z

Pathway activity profiling of growth factor receptor network and stemness pathways differentiates metaplastic breast cancer histological subtypes
Cited by: 16
Author(s): Jasmine A. McQuerry, D. Graham Jenkins, Susan E. Yost, Yuqing Zhang, Daniel Schmolze, W. Evan Johnson, Yuan Yuan, Andrea Bild
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0189389

PARS risk charts: A 10-year study of risk assessment for cardiovascular diseases in Eastern Mediterranean Region
Cited by: 24
Author(s): Nizal Sarrafzadegan, Razieh Hassannejad, Hamid Reza Marateb, Mohammad Talaei, Masoumeh Sadeghi, Hamidreza Roohafza, Farzad Masoudkabir, Shahram Oveisgharan, Marjan Mansourian, Mohammad Reza Mohebian, Miguel Ángel Mañanas
Software Mentions: 2
Published: about 7 years ago

10.1186/s12864-021-07433-4

SARS-CoV-2 early infection signature identified potential key infection mechanisms and drug targets
Cited by: 18
Author(s): Yue Li, Ashley Duche, Michael R. Sayer, Don Roosan, Farid G. Khalafalla, Rennolds S. Ostrom, Jennifer Totonchy, Moom R. Roosan
Software Mentions: 2
Published: almost 4 years ago

10.1186/s13601-019-0267-6

A specific synbiotic-containing amino acid-based formula restores gut microbiota in non-IgE mediated cow’s milk allergic infants: a randomized controlled trial
Cited by: 21
Author(s): Harm Wopereis, Marleen T. J. van Ampting, Aysun Cetinyurek-Yavuz, R. A. Slump, D. C. A. Candy, Assad Butt, Diego Peroni, Yvan Vandenplas, Adam Fox, Neil Shah, Guus Roeselers, Lucien F. Harthoorn, Louise J. Michaelis, Jan Knol, Christina West
Software Mentions: 2
Published: over 5 years ago

10.7759/cureus.15375

Cardiovascular Disease in the Indo-Caribbean Population: A Scoping Review
Cited by: 0
Author(s): Neha Bapatla, Uma D Ramoutar, Neeraj Kumar Sharma, Anjali Ramoutar, Valentina L Ortega, Anita Goorachan, Farzanna Haffizulla
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pgen.1003103

The Principal Genetic Determinants for Nasopharyngeal Carcinoma in China Involve the HLA Class I Antigen Recognition Groove
Cited by: 84
Author(s): Minzhong Tang, James A. Lautenberger, Xiaojiang Gao, Efe Sezgın, Sher L. Hendrickson, Jennifer L. Troyer, Victor A. David, Li Guan, Carl McIntosh, Xiuchan Guo, Yuming Zheng, Jian Liao, Hong Wen Deng, Michael Malasky, Bailey Kessing, Cheryl A. Winkler, Mary Carrington, Yi Zeng, Stephen J. O’Brien
Software Mentions: 2
Published: about 12 years ago

10.1161/HYPERTENSIONAHA.115.06501

Prediction of Cardiovascular Disease Risk by Cardiac Biomarkers in 2 United Kingdom Cohort Studies
Cited by: 31
Author(s): Paul Welsh, Carol Hart, Olia Papacosta, David Preiss, Alex McConnachie, Heather Murray, Sheena E Ramsay, Mark Upton, Graham Watt, Peter H. Whincup, Goya Wannamethee, Naveed Sattar
Software Mentions: 2
Published: almost 9 years ago

10.1093/eurheartj/ehz903

Sex associations and computed tomography coronary angiography-guided management in patients with stable chest pain
Cited by: 24
Author(s): Kenneth Mangion, Philip D Adamson, Michelle Williams, Amanda Hunter, Tania Pawade, Anoop Shah, Steff Lewis, Nicholas A. Boon, Marcus Flather, John F. Forbes, Scott A. McLean, Giles Roditi, Edwin Jacques Rudolph van Beek, Adam Timmis, David E. Newby, David McAllister, Colin Berry
Software Mentions: 2
Published: almost 5 years ago

10.1186/1752-0509-7-S3-S5

Analysis of intercellular signal transduction in the tumor microenvironment
Cited by: 17
Author(s): Haijun Gong
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0199299

Could chronic Vardenafil administration influence the cardiovascular risk in men with type 2 diabetes mellitus?
Cited by: 4
Author(s): Daniele Santi, Michela Locaso, Antonio R. M. Granata, Tommaso Trenti, L. Rovedatti, Chiara Pacchioni, Vincenzo Rochira, Cesare Carani, Manuela Simoni
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0081998

Availability and Quality of Coronary Heart Disease Family History in Primary Care Medical Records: Implications for Cardiovascular Risk Assessment
Cited by: 33
Author(s): Paula Dhiman, Joe Kai, Laura Horsfall, Kate Walters, Nadeem Qureshi
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0006687

HLA-Associated Immune Escape Pathways in HIV-1 Subtype B Gag, Pol and Nef Proteins
Cited by: 154
Author(s): Zabrina L. Brumme, Mina John, Jonathan M. Carlson, Chanson J. Brumme, Dennison Chan, Mark A. Brockman, Luke C. Swenson, Iris Tao, Sharon Szeto, Pamela C. Rosato, Jennifer Sela, Carl Kadie, Nicole Frahm, Christian Berthou, David W. Haas, Sharon A. Riddler, Richard Haubrich, Bruce D. Walker, P. Richard Harrigan, David Heckerman, S. Mallal
Software Mentions: 1
Published: over 15 years ago

10.1161/CIRCULATIONAHA.119.044720

Low-Attenuation Noncalcified Plaque on Coronary Computed Tomography Angiography Predicts Myocardial Infarction
Cited by: 296
Author(s): Michelle Williams, Jacek Kwieciński, Mhairi Doris, Priscilla McElhinney, Michelle D’Souza, Sebastien Cadet, Philip D Adamson, Alastair J Moss, Shirjel Alam, Amanda Hunter, Anoop Shah, Nicholas L Mills, Tania Pawade, Chengjia Wang, Jonathan Weir McCall, Michael Bonnici-Mallia, Christopher Murrills, Giles Roditi, Edwin Jacques Rudolph van Beek, Leslee J. Shaw, Edward Nicol, Daniel S. Berman, Piotr J. Slomka, David E. Newby, Marc R Dweck, Damini Dey
Software Mentions: 1
Published: over 4 years ago

10.1186/s13601-019-0241-3

A specific synbiotic-containing amino acid-based formula in dietary management of cow’s milk allergy: a randomized controlled trial
Cited by: 29
Author(s): Adam Fox, Harm Wopereis, Marleen T. J. van Ampting, Manon M. Oude Nijhuis, Assad Butt, Diego Peroni, Yvan Vandenplas, D. C. A. Candy, Neil Shah, Christina West, Johan Garssen, Lucien F. Harthoorn, Jan Knol, Louise J. Michaelis
Software Mentions: 1
Published: almost 6 years ago

10.1093/eurheartj/ehz915

Genetic dysregulation of endothelin-1 is implicated in coronary microvascular dysfunction
Cited by: 65
Author(s): Tom Ford, David Corcoran, Sandosh Padmanabhan, Alisha Aman, Paul Rocchiccioli, Richard Good, Margaret McEntegart, Janet J. Maguire, Stuart Watkins, Hany Eteiba, Aadil Shaukat, Mitchell Lindsay, Keith Robertson, Stuart Hood, Ross McGeoch, Robert McDade, Eric Yii, Naveed Sattar, Li‐Yueh Hsu, Andrew E Arai, Keith G. Oldroyd, Rhian M. Touyz, Anthony P. Davenport, Colin Berry
Software Mentions: 1
Published: almost 5 years ago

10.1093/eurheartj/ehaa571

Development and validation of two SCORE-based cardiovascular risk prediction models for Eastern Europe: a multicohort study
Cited by: 15
Author(s): Taavi Tillmann, Kristi Läll, Oliver Dukes, Giovanni Veronesi, Hynek Pikhart, Anne Peasey, Růžena Kubínová, Magdalena Kozela, Andrzej Pająk, Yuri Nikitin, Sofia Malyutina, Andres Metspalu, Tõnu Esko, Krista Fischer, Mika Kivimäki, Martin Bobák
Software Mentions: 1
Published: over 4 years ago

10.1093/ehjci/jeaa263

Prevalence and clinical implications of valvular calcification on coronary computed tomography angiography
Cited by: 15
Author(s): Michelle Williams, Daniele Massera, Alastair J Moss, Rong Bing, Anda Bularga, Philip D Adamson, Amanda Hunter, Shirjel Alam, Anoop Shah, Tania Pawade, Giles Roditi, Edwin Jacques Rudolph van Beek, Edward Nicol, David E. Newby, Marc R Dweck
Software Mentions: 1
Published: about 4 years ago

10.3389/fbioe.2021.678048

The Rheology of the Carotid Sinus: A Path Toward Bioinspired Intervention
Cited by: 4
Author(s): Andrew Iskander, Coşkun Bilgi, Rotem Naftalovich, Ilker Hacihaliloglu, Tolga Berkman, Daniel Naftalovich, Niema M. Pahlevan
Software Mentions: 1
Published: over 3 years ago

10.3389/fgene.2019.00121

CaDrA: A Computational Framework for Performing Candidate Driver Analyses Using Genomic Features
Cited by: 6
Author(s): Vinay K. Kartha, Paola Sebastiani, Joseph G. Kern, Liye Zhang, Xaralabos Varelas, Stefano Monti
Software Mentions: 1
Published: almost 6 years ago

10.3389/fphys.2016.00002

Personalized Cardiovascular Disease Prediction and Treatment—A Review of Existing Strategies and Novel Systems Medicine Tools
Cited by: 35
Author(s): Elias Björnson, Jan Borén, Adil Mardinoğlu
Software Mentions: 1
Published: almost 9 years ago

10.1186/s13073-018-0569-7

Functional and genomic analyses reveal therapeutic potential of targeting β-catenin/CBP activity in head and neck cancer
Cited by: 34
Author(s): Vinay K. Kartha, Khalid Alamoud, Khikmet Sadykov, Bach-Cuc Nguyen, Fabrice Laroche, Hui Feng, Jina Lee, Sara I. Pai, Xaralabos Varelas, Ann Marie Egloff, Jennifer Snyder‐Cappione, Anna C. Belkina, Manish V. Bais, Stefano Monti, Maria A. Kukuruzinska
Software Mentions: 1
Published: over 6 years ago

10.1161/JAHA.117.005967

Twenty‐Year Predictors of Peripheral Arterial Disease Compared With Coronary Heart Disease in the Scottish Heart Health Extended Cohort (SHHEC)
Cited by: 52
Author(s): Hugh Tunstall‐Pedoe, Sanne A.E. Peters, Mark Woodward, Allan D. Struthers, J. J. F. Belch
Software Mentions: 1
Published: over 7 years ago

10.1016/j.jcct.2019.01.006

The SCOT-HEART Trial. What we observed and what we learned
Cited by: 13
Author(s): Philip D Adamson, David E. Newby
Software Mentions: 1
Published: over 5 years ago

10.3390/jcdd7010011

Carotid and Femoral Atherosclerotic Plaques in Asymptomatic and Non-Treated Subjects: Cardiovascular Risk Factors, 10-Years Risk Scores, and Lipid Ratios’ Capability to Detect Plaque Presence, Burden, Fibro-Lipid Composition and Geometry
Cited by: 9
Author(s): Mariana Marin, Daniel Bia, Yanina Zócalo
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12968-018-0428-0

Systemic arteriosclerosis is associated with left ventricular remodeling but not atherosclerosis: a TASCFORCE study
Cited by: 7
Author(s): Jonathan R. Weir‐McCall, Matthew Lambert, Stephen J. Gandy, J. J. F. Belch, Ian Cavin, Shelley Henderson, Roberta Littleford, Jennifer A. Macfarlane, Shona Z. Matthew, R. Stephen Nicholas, Allan D. Struthers, Frank Sullivan, Richard D. White, J. Graeme Houston
Software Mentions: 1
Published: almost 7 years ago

10.14740/jocmr2417wc1

Correction: Efficacy and Safety of Ipragliflozin in Japanese Patients With Type 2 Diabetes: Interim Outcome of the ASSIGN-K Study
Cited by: 1
Author(s): Takashi Iizuka, Kotaro Iemitsu, Masahiro Takihata, Masahiko Takai, Shigeru Nakajima, Nobuaki Minami, Shinichi Umezawa, Akira Kanamori, Hiroshi Takeda, Takehiro Kawata, Shogo Ito, Taisuke Kikuchi, Hikaru Amemiya, Mizuki Kaneshiro, Atsuko Mokubo, Tetsuo Takuma, Hideo Machimura, Keiji Tanaka, Taro Asakura, Akira Kubota, Sachio Aoyagi, Kazuhiko Hoshino, Masashi Ishikawa, Yoko Matsuzawa, Mitsuo Obana, Nobuo Sasai, Hideaki Kaneshige, Fuyuki Minagawa, Tatsuya Saito, Kazuaki Shinoda, Masaaki Miyakawa, Yasushi Tanaka, Yasuo Terauchi, Ikuro Matsuba
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep31485

The Associations of HLA-A*02:01 and DRB1*11:01 with Hepatitis C Virus Spontaneous Clearance Are Independent of IL28B in the Chinese Population
Cited by: 22
Author(s): Jieting Huang, Ke Huang, Ru Xu, Min Wang, Qiao Liao, Hongyan Xiong, Chengyao Li, Xi Tang, Zhengang Shan, Ming Zhang, Rong Xiao, Kenrad E. Nelson, Yongshui Fu
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms221910291

Risk Prediction of Cardiovascular Events by Exploration of Molecular Data with Explainable Artificial Intelligence
Cited by: 16
Author(s): Annie M. Westerlund, Johann S. Hawe, Matthias Heinig, Heribert Schunkert
Software Mentions: 1
Published: over 3 years ago

10.1186/s12859-016-0962-4

Enumeration method for tree-like chemical compounds with benzene rings and naphthalene rings by breadth-first search order
Cited by: 3
Author(s): Jira Jindalertudomdee, Morihiro Hayashida, Yang Zhao, Tatsuya Akutsu
Software Mentions: 1
Published: almost 9 years ago

10.1136/openhrt-2014-000140

A cardiovascular disease policy model: part 2—preparing for economic evaluation and to assess health inequalities
Cited by: 6
Author(s): Kenny Lawson, James Lewsey, Ian Ford, Keith Fox, Lewis D Ritchie, Hugh Tunstall‐Pedoe, Graham Watt, Mark Woodward, Seamus Kent, Matthew Neilson, Andrew Briggs
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2261-14-27

Validation of continuous clinical indices of cardiometabolic risk in a cohort of Australian adults
Cited by: 24
Author(s): Suzanne J. Carroll, Catherine Paquet, Natasha Howard, Robert Adams, Anne Taylor, Mark Daniel
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12872-016-0196-4

Clinical assessment of patients with chest pain; a systematic review of predictive tools
Cited by: 19
Author(s): Luis Ayerbe, Esteban Alberto Gonzalez, Valentina Gallo, Claire L. Coleman, Andrew Wragg, John Robson
Software Mentions: 1
Published: almost 9 years ago

10.1186/1741-7015-11-263

Multimorbidity in bipolar disorder and undertreatment of cardiovascular disease: a cross sectional study
Cited by: 109
Author(s): Daniel J. Smith, Daniel J. Martin, Gary McLean, Julie Langan, Bruce Guthrie, Stewart W Mercer
Software Mentions: 1
Published: about 11 years ago

10.1186/s13104-015-1401-8

Variation among cardiovascular risk calculators in relative risk increases with identical risk factor increases
Cited by: 4
Author(s): G. Michael Allan, Faeze Nouri, Christina Korownyk, Michael R. Kolber, Ben Vandermeer, James McCormack
Software Mentions: 1
Published: over 9 years ago

10.1186/1472-6874-14-118

Independent external validation of cardiovascular disease mortality in women utilising Framingham and SCORE risk models: a mortality follow-up study
Cited by: 26
Author(s): Louise Gek Huang Goh, T. Welborn, Satvinder S. Dhaliwal
Software Mentions: 1
Published: over 10 years ago

10.1136/bmjopen-2018-024433

Impact of major depression on cardiovascular outcomes for individuals with hypertension: prospective survival analysis in UK Biobank
Cited by: 17
Author(s): Nicholas Graham, Joey Ward, Daniel Mackay, Jill P. Pell, Jonathan Cavanagh, Sandosh Padmanabhan, Daniel J. Smith
Software Mentions: 1
Published: over 5 years ago

10.1155/2020/6215435

KIR3DL1 and HLA-Bw4 Interaction Showed a Favorable Role in Patients with Myelodysplastic Syndromes in Chinese Southern Han
Cited by: 1
Author(s): Jian Xin Zhen, Si Cai, Yuan Tao Chen, Zhi Chao Yang, Jia Cai Zhuo, Zhihui Deng
Software Mentions: 1
Published: over 4 years ago

10.2471/BLT.14.150516

Eliminating artificial trans fatty acids in Argentina: estimated effects on the burden of coronary heart disease and costs
Cited by: 32
Author(s): Adolfo Rubinstein, Natalia Elorriaga, Osvaldo Ulises Garay, Rosana Poggio, Joaquín Caporale, María G. Matta, Federico Augustovski, Andrés Pichón-Riviere, Dariush Mozaffarian
Software Mentions: 1
Published: over 9 years ago

10.1186/1475-2840-11-71

Insulin resistance predicts progression of de novo atherosclerotic plaques in patients with coronary heart disease: a one-year follow-up study
Cited by: 47
Author(s): Xuanqi An, Yu Dong, Ruiyan Zhang, Jinzhou Zhu, Rong Du, Yuhang Shi, Xiaowei Xiong
Software Mentions: 1
Published: over 12 years ago

10.7717/peerj.8232

Evaluating Cardiovascular Disease (CVD) risk scores for participants with known CVD and non-CVD in a multiracial/ethnic Caribbean sample
Cited by: 3
Author(s): Amalia Hosein, Valerie Stoute, Samantha Chadee, Natasha Ramroop Singh
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0132179

Human Leukocyte Antigens-B and -C Loci Associated with Posner-Schlossman Syndrome in a Southern Chinese Population
Cited by: 13
Author(s): Jun Zhao, Tianhui Zhu, Wenjie Chen, Bao Jian Fan, Liumei He, Baocheng Yang, Zhihui Deng
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0106455

Prediction of Cardiovascular Risk Using Framingham, ASSIGN and QRISK2: How Well Do They Predict Individual Rather than Population Risk?
Cited by: 65
Author(s): Tjeerd van Staa, Martin Gulliford, Edmond S. W. Ng, Ben Goldacre, Liam Smeeth
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0073529

Framingham Risk Score for Prediction of Cardiovascular Diseases: A Population-Based Study from Southern Europe
Cited by: 36
Author(s): Luis Miguel Artigao-Ródenas, Julio Antonio Carbayo-Herencia, J.A. Divisón Garrote, Vicente Francisco Gil-Guillén, Javier Massó-Orozco, Marta Simarro-Rueda, Francisca Molina Escribano, Carlos Sanchís, Lucinio Carrión-Valero, Enrique López de Coca, D. Caldevilla, Juan López-Abril, Concepción Carratalá‐Munuera, Adriana López-Pineda
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0017043

Low CD4+ T Cell Counts among African HIV-1 Infected Subjects with Group B KIR Haplotypes in the Absence of Specific Inhibitory KIR Ligands
Cited by: 24
Author(s): Wim Jennes, Sonja Verheyden, Christian Demanet, Joris Menten, Béa Vuylsteke, John N. Nkengasong, Luc Kestens
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0213007

Development of an intelligent decision support system for ischemic stroke risk assessment in a population-based electronic health record database
Cited by: 20
Author(s): Chen Ying Hung, Ching Heng Lin, Tsuo Hung Lan, Giia Sheun Peng, Chi Chun Lee
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0147567

Identifying Patient-Specific Epstein-Barr Nuclear Antigen-1 Genetic Variation and Potential Autoreactive Targets Relevant to Multiple Sclerosis Pathogenesis
Cited by: 12
Author(s): M. Tschochner, Shay Leary, Don Cooper, K. Strautins, Abha Chopra, Hayley Clark, L. Choo, David S. Dunn, Ian James, William M. Carroll, Allan G. Kermode, David Nolan
Software Mentions: 1
Published: almost 9 years ago

Projects: bioconductor: ASSIGN

Papers Mentioning ASSIGN 54