Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12920-015-0121-1

https://doi.org/10.1186/s12920-015-0121-1

Cited by: 52
Author(s): Eduardo Castro-Nallar, Ying Shen, Robert J. Freishtat, Marcos Pérez‐Losada, Solaiappan Manimaran, Gang Lv, W. Evan Johnson, Keith A. Crandall
Published: almost 9 years ago

Software Mentions 12

bioconductor: ASSIGN

Adaptive Signature Selection and InteGratioN (ASSIGN)
Papers that mentioned: 54

bioconductor: DESeq2

Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583

cran: CHNOSZ

Thermodynamic Calculations and Diagrams for Geochemistry
Papers that mentioned: 13

cran: ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441

cran: gplots

Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122

cran: gtools

Various R Programming Tools
Papers that mentioned: 60

cran: plyr

Tools for Splitting, Applying and Combining Data
Papers that mentioned: 468

cran: reshape2

Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421

cran: xlsx

Read, Write, Format Excel 2007 and Excel 97/2000/XP/2003 Files
Papers that mentioned: 95

pypi: plyr

UNKNOWN
Papers that mentioned: 468

pypi: TopHat

TopHat Platform
Papers that mentioned: 5,017

pypi: xlsx

XLSX Parsing (from js-xlsx)
Papers that mentioned: 95