Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12920-015-0121-1

https://doi.org/10.1186/s12920-015-0121-1

Integrating microbial and host transcriptomics to characterize asthma-associated microbial communities

Cited by: 52
Author(s): Eduardo Castro-Nallar, Ying Shen, Robert J. Freishtat, Marcos Pérez‐Losada, Solaiappan Manimaran, Gang Lv, W. Evan Johnson, Keith A. Crandall
Published: over 9 years ago

Software Mentions 12

bioconductor: ASSIGN
Adaptive Signature Selection and InteGratioN (ASSIGN)
Papers that mentioned: 54
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
cran: CHNOSZ
Thermodynamic Calculations and Diagrams for Geochemistry
Papers that mentioned: 13
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: gplots
Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122
cran: gtools
Various R Programming Tools
Papers that mentioned: 60
cran: plyr
Tools for Splitting, Applying and Combining Data
Papers that mentioned: 468
cran: reshape2
Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421
cran: xlsx
Read, Write, Format Excel 2007 and Excel 97/2000/XP/2003 Files
Papers that mentioned: 95
pypi: plyr
UNKNOWN
Papers that mentioned: 468
pypi: TopHat
TopHat Platform
Papers that mentioned: 5,017
pypi: xlsx
XLSX Parsing (from js-xlsx)
Papers that mentioned: 95