Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: vignette
https://packages.ecosyste.ms/registries/pypi.org/packages/vignette
Library to create FreeDesktop-compatible thumbnails
14 versions
Latest release: about 1 year ago
2 dependent packages
181 downloads last month
Papers Mentioning vignette 7
10.3390/mps4020028
The Transcriptome of SH-SY5Y at Single-Cell Resolution: A CITE-Seq Data Analysis WorkflowCited by: 2
Author(s): Daniele Mercatelli, Nicola Balboni, Francesca De Giorgio, Emanuela Aleo, Caterina Garone, Federico M. Giorgi
Software Mentions: 9
Published: over 3 years ago
10.1186/1752-0509-6-133
CellNOptR: a flexible toolkit to train protein signaling networks to data using multiple logic formalismsCited by: 182
Author(s): Camille Terfve, Thomas Cokelaer, David Henriques, Aidan MacNamara, Emanuel Gonçalvès, Melody K. Morris, Martijn P. van Iersel, Douglas A. Lauffenburger, Julio Sáez-Rodríguez
Software Mentions: 7
Published: almost 12 years ago
10.3389/fgene.2021.731355
HandyCNV: Standardized Summary, Annotation, Comparison, and Visualization of Copy Number Variant, Copy Number Variation Region, and Runs of HomozygosityCited by: 5
Author(s): Juefei Zhou, Liyuan Liu, Thomas Lopdell, Dorian J. Garrick, Yiting Shi
Software Mentions: 6
Published: almost 3 years ago
10.1186/s12879-020-05598-z
Comparing tuberculosis gene signatures in malnourished individuals using the TBSignatureProfilerCited by: 9
Author(s): W. Evan Johnson, Aubrey Odom, Chelsie Cintron, Mutharaj Muthaiah, Selby Knudsen, Noyal Mariya Joseph, Senbagavalli Prakash Babu, Subitha Lakshminarayanan, D. Graham Jenkins, Yue Zhao, Ethel Nankya, C. Robert Horsburgh, Gautam Roy, Jerrold J. Ellner, Sonali Sarkar, Padmini Salgame, Natasha S. Hochberg
Software Mentions: 6
Published: over 3 years ago
10.1186/1471-2105-12-104
PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environmentCited by: 50
Author(s): Botond Sipos, Tim Massingham, Gregory E. Jordan, Nick Goldman
Software Mentions: 5
Published: over 13 years ago
10.1186/1752-0509-6-144
GraphAlignment: Bayesian pairwise alignment of biological networksCited by: 7
Author(s): Michal Kolář, Jörn Meier, Ville Mustonen, Michael Lässig, Johannes Berg
Software Mentions: 2
Published: almost 12 years ago
10.1111/2041-210X.12256
<i>mizer</i>: an R package for multispecies, trait-based and community size spectrum ecological modellingCited by: 77
Author(s): Scott Finlay, Julia L. Blanchard, Ken Haste Andersen
Software Mentions: 2
Published: almost 10 years ago