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Papers: 10.1186/1756-0500-3-277

https://doi.org/10.1186/1756-0500-3-277

EMA - A R package for Easy Microarray data analysis

Cited by: 45
Author(s): Nicolas Servant, Eléonore Gravier, Pierre Gestraud, Cécile Laurent, Caroline Paccard, Anne Biton, Isabel Martínez Brito, Jonas Mandel, Bernard Asselain, Emmanuel Barillot, Philippe Hupé
Published: over 14 years ago

Software Mentions 20

bioconductor: arrayQualityMetrics
Quality metrics report for microarray data sets
Papers that mentioned: 190
Very Likely Science (100)
bioconductor: biomaRt
Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446
Very Likely Science (100)
bioconductor: CMA
Synthesis of microarray-based classification
Papers that mentioned: 337
Very Likely Science (93)
bioconductor: GOstats
Tools for manipulating GO and microarrays
Papers that mentioned: 368
Very Likely Science (100)
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
Very Likely Science (78)
bioconductor: lumi
BeadArray Specific Methods for Illumina Methylation and Expression Microarrays
Papers that mentioned: 238
Very Likely Science (100)
bioconductor: multtest
Resampling-based multiple hypothesis testing
Papers that mentioned: 158
Very Likely Science (98)
bioconductor: RankProd
Rank Product method for identifying differentially expressed genes with application in meta-analysis
Papers that mentioned: 213
Very Likely Science (100)
bioconductor: siggenes
Multiple Testing using SAM and Efron's Empirical Bayes Approaches
Papers that mentioned: 72
Very Likely Science (90)
bioconductor: vsn
Variance stabilization and calibration for microarray data
Papers that mentioned: 91
Very Likely Science (100)
cran: cluster
"Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al.
Papers that mentioned: 416
Very Likely Science (85)
cran: FactoMineR
Multivariate Exploratory Data Analysis and Data Mining
Papers that mentioned: 1,101
Very Likely Science (85)
cran: GSA
Gene Set Analysis
Papers that mentioned: 285
Very Likely Science (93)
cran: Hmisc
Harrell Miscellaneous
Papers that mentioned: 1,000
Very Likely Science (75)
cran: MASS
Support Functions and Datasets for Venables and Ripley's MASS
Papers that mentioned: 2,353
Very Likely Science (100)
cran: SAM
Sparse Additive Modelling
Papers that mentioned: 4,566
Very Likely Science (85)
cran: xtable
Export Tables to LaTeX or HTML
Papers that mentioned: 32
Very Likely Science (83)
pypi: cluster
Simple clustering library for python.
Papers that mentioned: 416
Very Likely Science (80)
pypi: GSA
Python Package to implement Gravitational Search Algorithm. Documentation at:https://github.com/deepanshu1999/GSA
Papers that mentioned: 285
Very Likely Science (90)
pypi: xtable
operate table format in console. console table, csv, json, yaml and markdown.
Papers that mentioned: 32
Very Likely Science (65)