bioconductor: siggenes | Projects

10.1186/1756-0500-3-277

EMA - A R package for Easy Microarray data analysis
Cited by: 45
Author(s): Nicolas Servant, Eléonore Gravier, Pierre Gestraud, Cécile Laurent, Caroline Paccard, Anne Biton, Isabel Martínez Brito, Jonas Mandel, Bernard Asselain, Emmanuel Barillot, Philippe Hupé
Software Mentions: 20
Published: about 14 years ago

10.1186/s12864-021-07370-2

GCSscore: an R package for differential gene expression analysis in Affymetrix/Thermo-Fisher whole transcriptome microarrays
Cited by: 3
Author(s): Guy M. Harris, Shahroze Abbas, Michael F. Miles
Software Mentions: 17
Published: almost 4 years ago

10.3389/fgene.2020.569572

Aberrantly Methylated-Differentially Expressed Genes Identify Novel Atherosclerosis Risk Subtypes
Cited by: 6
Author(s): Yuzhou Xue, Yongzheng Guo, Suxin Luo, Wei Zhou, Jun Xiang, Yuansong Zhu, Zhenxian Xiang, Ju Shen
Software Mentions: 10
Published: almost 4 years ago

10.1371/journal.pone.0137132

Clustering of Expression Data in Chronic Lymphocytic Leukemia Reveals New Molecular Subdivisions
Cited by: 7
Author(s): Sally Yepes, María Mercedes Torres, Rafael Andrade
Software Mentions: 9
Published: about 9 years ago

10.1371/journal.pone.0183933

Tensor decomposition-based unsupervised feature extraction applied to matrix products for multi-view data processing
Cited by: 24
Author(s): Y-h. Taguchi
Software Mentions: 7
Published: about 7 years ago

10.1186/s13073-016-0334-8

Panx3 links body mass index and tumorigenesis in a genetically heterogeneous mouse model of carcinogen-induced cancer
Cited by: 12
Author(s): Kyle Halliwill, David A. Quigley, Hio Chung Kang, Reyno Del Rosario, David G. Ginzinger, Allan Balmain
Software Mentions: 7
Published: over 8 years ago

10.1186/s12859-018-2437-2

Adaptively capturing the heterogeneity of expression for cancer biomarker identification
Cited by: 1
Author(s): Xueping Xie, Yufeng Xie, Yitong Liu, Hongqiang Wang
Software Mentions: 6
Published: about 6 years ago

10.1186/1471-2229-10-150

Pathway analysis of the transcriptome and metabolome of salt sensitive and tolerant poplar species reveals evolutionary adaption of stress tolerance mechanisms
Cited by: 129
Author(s): Dennis Janz, Katja Behnke, Jörg‐Peter Schnitzler, Basem Kanawati, Philippe Schmitt‐Kopplin, Andrea Polle
Software Mentions: 5
Published: over 14 years ago

10.3389/fgene.2019.00772

Polycystic Ovary Syndrome: Novel and Hub lncRNAs in the Insulin Resistance-Associated lncRNA–mRNA Network
Cited by: 22
Author(s): Jun Zhao, Jiayu Huang, Xue Geng, Weiwei Chu, Shang Li, Zi‐Jiang Chen, Yanzhi Du
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-87779-7

Identification of genes associated with altered gene expression and m6A profiles during hypoxia using tensor decomposition based unsupervised feature extraction
Cited by: 10
Author(s): Sanjiban Sekhar Roy, Y-h. Taguchi
Software Mentions: 5
Published: over 3 years ago

10.1186/s13058-016-0714-4

Intermittent energy restriction induces changes in breast gene expression and systemic metabolism
Cited by: 33
Author(s): Michelle Harvie, Andrew H. Sims, Mary Pegington, Katherine Spence, Adam Mitchell, Andrew A. Vaughan, J. William Allwood, Yun Xu, Nicholas J. W. Rattray, Royston Goodacre, D. Gareth Evans, Ellen Sullivan Mitchell, Debbie McMullen, Robert B. Clarke, Anthony Howell
Software Mentions: 5
Published: over 8 years ago

10.1038/s41438-019-0146-2

Rootstock effects on scion phenotypes in a ‘Chambourcin’ experimental vineyard
Cited by: 31
Author(s): Zoë Migicovsky, Zachary N. Harris, Laura L. Klein, Mao Li, Adam McDermaid, Daniel H. Chitwood, Anne Fennell, László Kovács, Misha T. Kwasniewski, Jason P. Londo, Qin Ma, Allison J. Miller
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pcbi.0040006

Comprehensive Analysis of Affymetrix Exon Arrays Using BioConductor
Cited by: 45
Author(s): Michał Okoniewski, Crispin Miller
Software Mentions: 5
Published: over 16 years ago

10.1186/1476-4598-6-64

Molecular signatures define two main classes of meningiomas
Cited by: 65
Author(s): Lucia Helena de Carvalho, Иван Смирнов, Gilson S. Baía, Zora Modrušan, Justin S. Smith, Peter Jun, J Costello, Michael W. McDermott, Scott R. VandenBerg, Anita Lal
Software Mentions: 4
Published: about 17 years ago

10.1186/1471-2105-7-335

AMDA: an R package for the automated microarray data analysis
Cited by: 35
Author(s): Mattia Pelizzola, Norman Pavelka, Maria Foti, Paola Ricciardi‐Castagnoli
Software Mentions: 4
Published: over 18 years ago

10.1186/1471-2105-9-548

GeneChaser: Identifying all biological and clinical conditions in which genes of interest are differentially expressed
Cited by: 34
Author(s): Rong Chen, Rohan Mallelwar, Ajit Thosar, Shivkumar Venkatasubrahmanyam, Atul J. Butte
Software Mentions: 4
Published: almost 16 years ago

10.1186/1471-2121-14-43

In vitro three-dimensional modeling of fallopian tube secretory epithelial cells
Cited by: 39
Author(s): Kate Lawrenson, Maria Notaridou, Nathan Lee, E. Benjamin, Ian Jacobs, Christopher S. Jones, Simon A. Gayther
Software Mentions: 4
Published: about 11 years ago

10.1186/1471-2164-11-23

Transcriptomic profiling of bovine IVF embryos revealed candidate genes and pathways involved in early embryonic development
Cited by: 37
Author(s): Wen Huang, Brian S. Yandell, Hasan Khatib
Software Mentions: 4
Published: almost 15 years ago

10.1186/s13058-019-1159-3

On-treatment biomarkers can improve prediction of response to neoadjuvant chemotherapy in breast cancer
Cited by: 32
Author(s): Richard J. Bownes, Arran Turnbull, Carlos Martínez-Pérez, David Cameron, Andrew H. Sims, Olga Oikonomidou
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0013169

Gene Expression Signature-Based Screening Identifies New Broadly Effective Influenza A Antivirals
Cited by: 58
Author(s): Laurence Josset, Julien Textoris, Béatrice Loriod, Olivier Ferraris, Vincent Moulès, Bruno Lina, Catherine Nguyen, Jean‐Jacques Diaz, Manuel Rosa‐Calatrava
Software Mentions: 4
Published: about 14 years ago

10.1371/journal.pone.0025023

Determining Signalling Nodes for Apoptosis by a Genetic High-Throughput Screen
Cited by: 5
Author(s): Bevan Lin, Derek Huntley, Ghada AbuAli, Sarah R. Langley, George Sindelar, Enrico Petretto, Sarah Butcher, Stefan Grimm
Software Mentions: 4
Published: about 13 years ago

10.1186/gb-2005-6-6-r54

Cited by: 148
Author(s): Nils Rostoks, Justin O. Borevitz, Pete E. Hedley, Joanne Russell, Sharon Mudie, Jenny Morris, Linda Cardle, David Marshall, Robbie Waugh
Software Mentions: 4
Published: almost 20 years ago

10.1186/gb-2014-15-2-r21

Genome-wide analysis links emerin to neuromuscular junction activity in Caenorhabditis elegans
Cited by: 46
Author(s): Cristina González-Aguilera, Kohta Ikegami, Cristina de la Cruz Ayuso, Alberto de Luis, María Íñiguez, Juan Cabello, Jason D. Lieb, Peter Askjaer
Software Mentions: 4
Published: almost 11 years ago

10.1038/srep29434

Tumour sampling method can significantly influence gene expression profiles derived from neoadjuvant window studies
Cited by: 13
Author(s): Dominic Pearce, Laura Arthur, Arran Turnbull, Lorna Renshaw, Victoria Sabine, Jeremy Thomas, John M.S. Bartlett, J. Michael Dixon, Andrew H. Sims
Software Mentions: 4
Published: over 8 years ago

10.1038/srep41238

Patient-specific hepatocyte-like cells derived from induced pluripotent stem cells model pazopanib-mediated hepatotoxicity
Cited by: 43
Author(s): Yukti Choudhury, Yi‐Chin Toh, Jiangwa Xing, Yinghua Qu, Jonathan Poh, Huan Li, Hui Shan Tan, Ravindran Kanesvaran, Hanry Yu, Min‐Han Tan
Software Mentions: 3
Published: almost 8 years ago

10.1186/1471-2202-9-93

Bioinformatic and statistical analysis of the optic nerve head in a primate model of ocular hypertension
Cited by: 40
Author(s): Kenneth S Kompass, Olga A. Agapova, Wenjun Li, Paul L. Kaufman, Carol A. Rasmussen, M. Rosario Hernandez
Software Mentions: 3
Published: about 16 years ago

10.1042/BSR20203204

<i>FRZB</i> as a key molecule in abdominal aortic aneurysm progression affecting vascular integrity
Cited by: 6
Author(s): Chang‐Kyu Oh, Yeji Ko, Jeong-Jun Park, Hye Jin Heo, Junmo Kang, Eun Jung Kwon, Ji Wan Kang, Yoonsung Lee, Kyungjae Myung, Jin Mo Kang, Dai Sik Ko, Yun Hak Kim
Software Mentions: 3
Published: almost 4 years ago

10.1186/s13578-021-00546-z

Alterations of RNA splicing patterns in esophagus squamous cell carcinoma
Cited by: 10
Author(s): Jiyu Ding, Chunquan Li, Yin-Wei Cheng, Zhifeng Du, Qiuyu Wang, Zhidong Tang, Chao Song, Qiaoxi Xia, Wenjing Bai, Gang Li, Wei Liu, Li‐Yan Xu, En‐Min Li, Bingli Wu
Software Mentions: 3
Published: almost 4 years ago

10.1155/2013/610297

Power and Stability Properties of Resampling-Based Multiple Testing Procedures with Applications to Gene Oncology Studies
Cited by: 12
Author(s): Dongmei Li, Timothy D. Dye
Software Mentions: 3
Published: almost 12 years ago

10.1038/srep44605

MicroRNA roles in signalling during lactation: an insight from differential expression, time course and pathway analyses of deep sequence data
Cited by: 65
Author(s): Duy Ngoc, Ran Li, Pier-Luc Dudemaine, Eveline M. Ibeagha‐Awemu
Software Mentions: 3
Published: over 7 years ago

10.1186/1743-422X-8-285

Cellular transcriptional profiling in human lung epithelial cells infected by different subtypes of influenza A viruses reveals an overall down-regulation of the host p53 pathway
Cited by: 38
Author(s): Benjamin Terrier, Laurence Josset, Julien Textoris, Virginie Marcel, Gaëlle Cartet, Olivier Ferraris, Catherine Nguyen, Bruno Lina, Jean‐Jacques Diaz, Jean-Christophe Bourdon, Manuel Rosa‐Calatrava
Software Mentions: 3
Published: over 13 years ago

10.1186/1471-2164-11-134

Correcting for intra-experiment variation in Illumina BeadChip data is necessary to generate robust gene-expression profiles
Cited by: 32
Author(s): Robert Kitchen, Victoria Sabine, Andrew H. Sims, E.J. Macaskill, Lorna Renshaw, Jeremy Thomas, Jano van Hemert, JM Dixon, John M.S. Bartlett
Software Mentions: 3
Published: over 14 years ago

10.3389/fgene.2019.01260

Joint Transcriptomic Analysis of Lung Cancer and Other Lung Diseases
Cited by: 8
Author(s): Beatriz Andrea Otálora‐Otálora, Mauro Florez, Liliana López‐Kleine, Alejandra Cañas Arboleda, Diana Urrego, Alejandra Rojas
Software Mentions: 3
Published: almost 5 years ago

10.1186/1471-2105-6-129

Considerations when using the significance analysis of microarrays (SAM) algorithm
Cited by: 110
Author(s): Ola Larsson, Claes Wahlestedt, James A. Timmons
Software Mentions: 3
Published: over 19 years ago

10.1371/journal.pone.0015595

A Novel Statistical Algorithm for Gene Expression Analysis Helps Differentiate Pregnane X Receptor-Dependent and Independent Mechanisms of Toxicity
Cited by: 8
Author(s): M. Ann Mongan, Robert T. Dunn, Steven Vonderfecht, Nancy E. Everds, Guang Chen, Cheng Su, Marnie Higgins-Garn, Yuan Chen, Cynthia A. Afshari, Toni Williamson, Linda L. Carlock, Christopher DiPalma, Suzanne T. Moss, Jeanine L. Bussiere, Charles W. Qualls, Yudong He, Hisham K. Hamadeh
Software Mentions: 3
Published: almost 14 years ago

10.1186/1471-2105-8-346

A framework for significance analysis of gene expression data using dimension reduction methods
Cited by: 41
Author(s): Lars Gidskehaug, Endre Anderssen, Arnar Flatberg, Bjørn K. Alsberg
Software Mentions: 3
Published: about 17 years ago

10.1186/gb-2007-8-5-r79

An annotation infrastructure for the analysis and interpretation of Affymetrix exon array data
Cited by: 42
Author(s): Michał Okoniewski, Timothy Yates, Siân Dibben, Crispin Miller
Software Mentions: 3
Published: almost 18 years ago

10.3892/ijo.2014.2648

Microarray phosphatome profiling of breast cancer patients unveils a complex phosphatase regulatory role of the MAPK and PI3K pathways in estrogen receptor-negative breast cancers
Cited by: 13
Author(s): Ramón González Manzano, E. Martinez-Navarro, Jerónimo Forteza, Antonio Brugarolas
Software Mentions: 3
Published: about 10 years ago

10.1186/1471-2105-14-143

Investigating the concordance of Gene Ontology terms reveals the intra- and inter-platform reproducibility of enrichment analysis
Cited by: 23
Author(s): Lifang Zhang, Juan Zhang, Gang Yang, Di Wu, Lina Jiang, Zhining Wen, Menglong Li
Software Mentions: 3
Published: over 11 years ago

10.1186/1471-2105-9-144

Empirical Bayes analysis of single nucleotide polymorphisms
Cited by: 21
Author(s): Holger Schwender, Katja Ickstadt
Software Mentions: 3
Published: over 16 years ago

10.1371/journal.pone.0156006

Gene Co-Expression Network Analysis for Identifying Modules and Functionally Enriched Pathways in Type 1 Diabetes
Cited by: 48
Author(s): Ignacio Riquelme Medina, Zelmina Lubovac-Pilav
Software Mentions: 3
Published: over 8 years ago

10.1186/1471-2202-8-59

Transcriptional control in embryonic Drosophila midline guidance assessed through a whole genome approach
Cited by: 10
Author(s): Tiago R. Magalhães, Jessica Palmer, Pavel Tomančák, Katherine S. Pollard
Software Mentions: 3
Published: over 17 years ago

10.1371/journal.pgen.1008591

The conserved transcriptional regulator CdnL is required for metabolic homeostasis and morphogenesis in Caulobacter
Cited by: 13
Author(s): Selamawit Abi Woldemeskel, Allison K. Daitch, Laura Álvarez, Gaël Panis, Rilee Zeinert, Diego González, Erika Smith, Justine Collier, Peter Chien, Felipe Cava, Patrick H. Viollier, Erin D. Goley
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0031490

The Gene Expression Analysis of Blood Reveals S100A11 and AQP9 as Potential Biomarkers of Infective Endocarditis
Cited by: 44
Author(s): Franck Thuny, Julien Textoris, Amira Ben Amara, Adil El Filali, Christian Capo, Gilbert Habib, Didier Raoult, Jean‐Louis Mège
Software Mentions: 3
Published: almost 13 years ago

10.1371/journal.pone.0045178

An Accurate Prostate Cancer Prognosticator Using a Seven-Gene Signature Plus Gleason Score and Taking Cell Type Heterogeneity into Account
Cited by: 30
Author(s): Xin Chen, Shizhong Xu, Michael McClelland, Farah Rahmatpanah, Anne Sawyers, Zhenyu Jia, Dan Mercola
Software Mentions: 3
Published: about 12 years ago

10.1371/journal.pone.0080099

Assessing Differential Expression in Two-Color Microarrays: A Resampling-Based Empirical Bayes Approach
Cited by: 4
Author(s): Dongmei Li, Marc A. Le Pape, Nisha I. Parikh, Will X. Chen, Timothy D. Dye
Software Mentions: 3
Published: almost 11 years ago

10.1186/1471-2105-16-S18-S16

Identification of aberrant gene expression associated with aberrant promoter methylation in primordial germ cells between E13 and E16 rat F3 generation vinclozolin lineage
Cited by: 23
Author(s): Y-h. Taguchi
Software Mentions: 3
Published: almost 9 years ago

10.1186/1756-8935-4-10

Genome-wide mapping of imprinted differentially methylated regions by DNA methylation profiling of human placentas from triploidies
Cited by: 74
Author(s): Ryan K. C. Yuen, Ruiwei Jiang, Maria S. Peñaherrera, Deborah E. McFadden, Wendy P. Robinson
Software Mentions: 2
Published: over 13 years ago

10.3390/md12021102

Mode of Action of Diterpene and Characterization of Related Metabolites from the Soft Coral, Xenia elongata
Cited by: 16
Author(s): Eric H. Andrianasolo, Liti Haramaty, Eileen White, Richard A. Lutz, Paul G. Falkowski
Software Mentions: 2
Published: almost 11 years ago

10.3892/mmr.2014.2766

Expression analysis of the estrogen receptor target genes in renal cell carcinoma
Cited by: 8
Author(s): Zhihong Liu, You Lü, Zongling He, Libo Chen, Yiping Lu
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0084439

Effective Identification of Gram-Negative Bacterial Type III Secreted Effectors Using Position-Specific Residue Conservation Profiles
Cited by: 25
Author(s): Xiaojiao Yang, Yanzhi Guo, Jiesi Luo, Xuemei Pu, Menglong Li
Software Mentions: 2
Published: almost 11 years ago

10.1186/1471-2164-13-323

Brain transcriptome variation among behaviorally distinct strains of zebrafish (Danio rerio)
Cited by: 50
Author(s): Robert E. Drew, Matthew L. Settles, Erin Churchill, Shayna M Williams, Soniya Balli, Barrie D. Robison
Software Mentions: 2
Published: over 12 years ago

10.1371/journal.pone.0029429

Genomic Analysis of wig-1 Pathways
Cited by: 5
Author(s): Yalda Sedaghat, Curt Mazur, Mahyar Sabripour, Gene Hung, Brett P. Monia
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pone.0015271

The Prevalence and Regulation of Antisense Transcripts in Schizosaccharomyces pombe
Cited by: 52
Author(s): Ting Ni, Kang Tu, Zhong Wang, Shen Song, Han Wu, Bin Xie, Kristin C. Scott, Shiv I. S. Grewal, Yuan Gao, Jun Zhu
Software Mentions: 2
Published: almost 14 years ago

10.1371/journal.pone.0251163

Clinical evaluation of BCL-2/XL levels pre- and post- HER2-targeted therapy
Cited by: 5
Author(s): Jason J. Zoeller, Michael F. Press, Laura M. Selfors, Judy Dering, Dennis J. Slamon, Sara A. Hurvitz, Joan S. Brugge
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0062910

Integrating Murine Gene Expression Studies to Understand Obstructive Lung Disease Due to Chronic Inhaled Endotoxin
Cited by: 1
Author(s): Peggy S. Lai, Oliver Hofmann, Rebecca M. Baron, Manuela Cernadas, Quanxin Meng, Herbert S. Bresler, David M. Brass, Ivana V. Yang, David A. Schwartz, David C. Christiani, Winston Hide
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0118378

Transcriptomic Responses of Atlantic Salmon (Salmo salar) to Environmental Enrichment during Juvenile Rearing
Cited by: 17
Author(s): Melissa L. Evans, Tiago S. Hori, Matthew L. Rise, Ian A. Fleming
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0023900

B Cell Signature during Inactive Systemic Lupus Is Heterogeneous: Toward a Biological Dissection of Lupus
Cited by: 48
Author(s): Jean-Claude Garaud, Jean-Nicolas Schickel, G. Blaison, Anne‐Marie Knapp, Doulaye Dembélé, Julie Ruer-Laventie, Anne‐Sophie Korganow, Thierry Martin, Pauline Soulas-Sprauel, Jean‐Louis Pasquali
Software Mentions: 2
Published: about 13 years ago

10.1186/1471-2164-13-431

A moderate increase in ambient temperature modulates the Atlantic cod (Gadus morhua) spleen transcriptome response to intraperitoneal viral mimic injection
Cited by: 58
Author(s): Tiago S. Hori, A. Kurt Gamperl, Marije Booman, Gordon W. Nash, Matthew L. Rise
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pone.0039359

Molecular Effects of Doxycycline Treatment on Pterygium as Revealed by Massive Transcriptome Sequencing
Cited by: 20
Author(s): Ignacio M. Larráyoz, Alberto de Luis, Óscar Rúa, Sara Velilla, Juan Cabello, Alfredo Martı́nez
Software Mentions: 2
Published: over 12 years ago

10.1007/s10549-020-05856-3

Immune system and angiogenesis-related potential surrogate biomarkers of response to everolimus-based treatment in hormone receptor-positive breast cancer: an exploratory study
Cited by: 8
Author(s): Francesco Schettini, Navid Sobhani, Anna Ianza, Tiziana Triulzi, Alfredo Molteni, Maria Chiara Lazzari, Carla Strina, Manuela Milani, Silvia Paola Corona, Marianna Sirico, Ottavia Bernocchi, Fabiola Giudici, M. Cappelletti, Eva Ciruelos, Guy Jérusalem, S. Loi, Stephen B. Fox, Daniele Generali
Software Mentions: 2
Published: over 4 years ago

10.3389/fcimb.2014.00179

Myeloid decidual dendritic cells and immunoregulation of pregnancy: defective responsiveness to Coxiella burnetii and Brucella abortus
Cited by: 16
Author(s): Laurent Gorvel, Amira Ben Amara, Mignane Ka, Julien Textoris, Jean‐Pierre Gorvel, Jean‐Louis Mège
Software Mentions: 2
Published: almost 10 years ago

10.1186/1471-2105-8-285

miRAS: a data processing system for miRNA expression profiling study
Cited by: 2
Author(s): Feng Tian, Huayue Zhang, Xinyu Zhang, Chi Song, Yuanming Xia, Yiqing Wu, Xiangjun Liu
Software Mentions: 2
Published: over 17 years ago

10.3389/fpsyt.2021.554621

Protein Biomarkers of Autism Spectrum Disorder Identified by Computational and Experimental Methods
Cited by: 9
Author(s): Fang Yao, Kaoyuan Zhang, Chengyun Feng, Yan Gao, Liming Shen, Xukun Liu, Jiazuan Ni
Software Mentions: 2
Published: over 3 years ago

10.1001/jamanetworkopen.2020.35048

Molecular Diversity of Clinically Stable Human Kidney Allografts
Cited by: 8
Author(s): Dmitry Rychkov, Swastika Sur, Marina Sirota, Minnie M. Sarwal
Software Mentions: 2
Published: almost 4 years ago

10.18632/oncotarget.11513

Epithelial-mesenchymal transition and nuclear β-catenin induced by conditional intestinal disruption of Cdh1 with Apc is E-cadherin EC1 domain dependent
Cited by: 4
Author(s): Julia Anne Helen Matheson, Claudia Bühnemann, Emma Carter, David Barnes, H. H. Hoppe, Judy Hughes, Stephen Cobbold, J. A. Harper, Hans Morreau, Mirvat Surakhy, A. Bassim Hassan
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0017083

An In Vitro Model That Recapitulates the Epithelial to Mesenchymal Transition (EMT) in Human Breast Cancer
Cited by: 47
Author(s): Elad Katz, Sylvie Dubois-Marshall, Andrew H. Sims, Philippe Gautier, Helen Caldwell, Richard R. Meehan, David J. Harrison
Software Mentions: 1
Published: almost 14 years ago

10.1186/1476-511X-12-96

A commonly used rumen-protected conjugated linoleic acid supplement marginally affects fatty acid distribution of body tissues and gene expression of mammary gland in heifers during early lactation
Cited by: 11
Author(s): Ronny Krämer, Simone Wolf, Tobias Petri, Dirk von Soosten, Sven Dänicke, Eva-Maria Weber, Ralf Zimmer, J. Rehage, Gerhard Jahreis
Software Mentions: 1
Published: over 11 years ago

10.1186/s13058-019-1166-4

The prognostic value of JUNB-positive CTCs in metastatic breast cancer: from bioinformatics to phenotypic characterization
Cited by: 17
Author(s): Galatea Kallergi, Vasileia Tsintari, Stelios Sfakianakis, Ekaterini S. Bei, Eleni Lagoudaki, Anastasios Koutsopoulos, Nefeli Zacharopoulou, Saad Alkahtani, Saud Alarifi, Christos Stournaras, Michalis Zervakis, Vassilis Georgoulias
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2180-9-217

Gene expression analysis of the biocontrol fungus Trichoderma harzianum in the presence of tomato plants, chitin, or glucose using a high-density oligonucleotide microarray
Cited by: 55
Author(s): Ilanit Samolski, Alberto de Luis, Juan Antonio Vizcaíno, Enrique Monte, M. Belén Suárez
Software Mentions: 1
Published: about 15 years ago

10.1111/jcmm.13376

Identification and analysis of a key long non-coding RNAs (lncRNAs)-associated module reveal functional lncRNAs in cardiac hypertrophy
Cited by: 12
Author(s): Jian Zhang, Chenchen Feng, Chao Song, Bo Ai, Xuefeng Bai, Yuejuan Liu, Xuecang Li, Jian Zhao, Shengshu Shi, Xin Chen, Xiaojie Su, Chunquan Li
Software Mentions: 1
Published: about 7 years ago

Projects: bioconductor: siggenes

Papers Mentioning siggenes 72