Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12864-021-07370-2

https://doi.org/10.1186/s12864-021-07370-2

GCSscore: an R package for differential gene expression analysis in Affymetrix/Thermo-Fisher whole transcriptome microarrays

Cited by: 3
Author(s): Guy M. Harris, Shahroze Abbas, Michael F. Miles
Published: almost 4 years ago

Software Mentions 17

bioconductor: affxparser
Affymetrix File Parsing SDK
Papers that mentioned: 13
bioconductor: AnnotationDbi
Manipulation of SQLite-based annotations in Bioconductor
Papers that mentioned: 73
bioconductor: AnnotationForge
Tools for building SQLite-based annotation data packages
Papers that mentioned: 11
bioconductor: Biobase
Biobase: Base functions for Bioconductor
Papers that mentioned: 104
bioconductor: GCSscore
GCSscore: an R package for microarray analysis for Affymetrix/Thermo Fisher arrays
Papers that mentioned: 1
bioconductor: GEOquery
Get data from NCBI Gene Expression Omnibus (GEO)
Papers that mentioned: 328
bioconductor: siggenes
Multiple Testing using SAM and Efron's Empirical Bayes Approaches
Papers that mentioned: 72
bioconductor: sscore
S-Score Algorithm for Affymetrix Oligonucleotide Microarrays
Papers that mentioned: 1
cran: BiocManager
Access the Bioconductor Project Package Repository
Papers that mentioned: 35
cran: devtools
Tools to Make Developing R Packages Easier
Papers that mentioned: 157
cran: dplR
Dendrochronology Program Library in R
Papers that mentioned: 50
cran: RSQLite
SQLite Interface for R
Papers that mentioned: 27
cran: SAM
Sparse Additive Modelling
Papers that mentioned: 4,566
cran: stringr
Simple, Consistent Wrappers for Common String Operations
Papers that mentioned: 172
pypi: devtools
Python's missing debug print command, and more.
Papers that mentioned: 157
pypi: stats
Calculator-style statistical functions
Papers that mentioned: 3,105
pypi: utils
A grab-bag of utility functions and objects
Papers that mentioned: 35