Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: AnnotationForge
https://packages.ecosyste.ms/registries/bioconductor.org/packages/AnnotationForge
Tools for building SQLite-based annotation data packages
1 version
Latest release: about 1 year ago
5 dependent packages
448,126 downloads total
Papers Mentioning AnnotationForge 11
10.1186/s12864-021-07370-2
GCSscore: an R package for differential gene expression analysis in Affymetrix/Thermo-Fisher whole transcriptome microarraysCited by: 3
Author(s): Guy M. Harris, Shahroze Abbas, Michael F. Miles
Software Mentions: 17
Published: almost 4 years ago
10.7554/eLife.62800
Mapping immune variation and var gene switching in naive hosts infected with Plasmodium falciparumCited by: 18
Author(s): Kathryn H. Milne, Alasdair Ivens, Adam J. Reid, Magda E. Lotkowska, Áine O’Toole, Geetha Sankaranarayanan, Diana Muñoz Sandoval, Wiebke Nahrendorf, Clément Regnault, Nick J. Edwards, Sarah E. Silk, Ruth Payne, Angela M. Minassian, Navin Venkatraman, Mandy Sanders, Adrian V. S. Hill, Michael P. Barrett, Matthew Berriman, Simon J. Draper, J. Alexandra Rowe, Philip J. Spence
Software Mentions: 7
Published: over 3 years ago
10.1080/21623945.2019.1595269
Transcriptome profiling reveals association of peripheral adipose tissue pathology with type-2 diabetes in Asian IndiansCited by: 17
Author(s): Aditya Saxena, Prabhat Tiwari, Nitin Wahi, Arpana Soni, Ram Chandra Bansiwal, Anshul Kumar, Balram Sharma, Prakash P Punjabi, Nidhi Gupta, Babita Malik, Krishna Mohan Medicherla, Prashanth Suravajhala, Sandeep Kumar Mathur
Software Mentions: 6
Published: almost 6 years ago
10.1186/1471-2105-14-75
virtualArray: a R/bioconductor package to merge raw data from different microarray platformsCited by: 51
Author(s): Andreas Heider, Rüdiger Alt
Software Mentions: 5
Published: over 11 years ago
10.7717/peerj.3737
Allele specific expression analysis identifies regulatory variation associated with stress-related genes in the Mexican highland maize landrace Palomero ToluqueñoCited by: 16
Author(s): M. Rocío Aguilar-Rangel, Ricardo A. Chávez Montes, Eric González‐Segovia, Jeffrey Ross‐Ibarra, June Simpson, Ruairidh J. H. Sawers
Software Mentions: 4
Published: over 7 years ago
10.1371/journal.pone.0127103
From Glacier to Sauna: RNA-Seq of the Human Pathogen Black Fungus Exophiala dermatitidis under Varying Temperature Conditions Exhibits Common and Novel Fungal ResponseCited by: 31
Author(s): Barbara Blasi, Hakim Tafer, Donatella Tesei, Katja Sterflinger
Software Mentions: 4
Published: over 9 years ago
10.3390/biom10091230
The Transcriptomic Evidence on the Role of Abdominal Visceral vs. Subcutaneous Adipose Tissue in the Pathophysiology of Diabetes in Asian Indians Indicates the Involvement of BothCited by: 6
Author(s): Anshul Kumar, Prabhat Tiwari, Aditya Saxena, Naincy Purwar, Nitin Wahi, Balram Sharma, Sandeep Kumar Mathur
Software Mentions: 4
Published: over 4 years ago
10.1093/gbe/evab042
A De Novo Transcriptome Assembly of<i>Ceratopteris richardii</i>Provides Insights into the Evolutionary Dynamics of Complex Gene Families in Land PlantsCited by: 21
Author(s): Yichao Geng, Chao Cai, Scott A. M. McAdam, Jo Ann Banks, Jennifer H. Wisecaver, Yun Zhou
Software Mentions: 3
Published: over 3 years ago
10.1093/gigascience/giz069
Box, stalked, and upside-down? Draft genomes from diverse jellyfish (Cnidaria, Acraspeda) lineages: Alatina alata (Cubozoa), Calvadosia cruxmelitensis (Staurozoa), and Cassiopea xamachana (Scyphozoa)Cited by: 36
Author(s): Aki Ohdera, Cheryl Lewis Ames, Rebecca B. Dikow, Ehsan Kayal, Marta Chiodin, Ben Busby, Sean La, Stacy Pirro, Allen G. Collins, Mónica Medina, Joseph F. Ryan
Software Mentions: 3
Published: over 5 years ago
10.1038/s41598-020-66620-7
Roles of Elm1 in antifungal susceptibility and virulence in Candida glabrataCited by: 4
Author(s): Yuya Ito, Taiga Miyazaki, Yutaka Tanaka, Takashi Suematsu, Hironobu Nakayama, Akihiro Morita, Tatsuro Hirayama, Masato Tashiro, Takahiro Takazono, Tomomi Saijo, Shintaro Shimamura, Kazuko Yamamoto, Yoshifumi Imamura, Koichi Izumikawa, Katsunori Yanagihara, Shigeru Kohno, Hiroshi Mukae
Software Mentions: 3
Published: over 4 years ago
10.3390/plants9111498
Grapevine–Downy Mildew Rendezvous: Proteome Analysis of the First Hours of an Incompatible InteractionCited by: 8
Author(s): Rita B. Santos, Rui Nascimento, Ana Varela Coelho, Andreia Figueiredo
Software Mentions: 2
Published: about 4 years ago