Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.43966

https://doi.org/10.7554/eLife.43966

Cited by: 91
Author(s): Min Jung, Daniel Wells, Jannette Rusch, Suhaira Ahmad, Jonathan Marchini, Simon Myers, Donald F. Conrad
Published: almost 5 years ago

Software Mentions 22

bioconductor: biomaRt
Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446
bioconductor: ComplexHeatmap
Make Complex Heatmaps
Papers that mentioned: 565
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
cran: bigmemory
Manage Massive Matrices with Shared Memory and Memory-Mapped Files
Papers that mentioned: 10
cran: cowplot
Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Papers that mentioned: 298
cran: ggforce
Accelerating 'ggplot2'
Papers that mentioned: 24
cran: ggnewscale
Multiple Fill and Colour Scales in 'ggplot2'
Papers that mentioned: 12
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: ggrastr
Rasterize Layers for 'ggplot2'
Papers that mentioned: 4
cran: ggrepel
Automatically Position Non-Overlapping Text Labels with 'ggplot2'
Papers that mentioned: 164
cran: ggseqlogo
A 'ggplot2' Extension for Drawing Publication-Ready Sequence Logos
Papers that mentioned: 49
cran: MASS
Support Functions and Datasets for Venables and Ripley's MASS
Papers that mentioned: 2,353
cran: Matrix
Sparse and Dense Matrix Classes and Methods
Papers that mentioned: 172
cran: princurve
Fit a Principal Curve in Arbitrary Dimension
Papers that mentioned: 3
cran: RColorBrewer
ColorBrewer Palettes
Papers that mentioned: 490
cran: Rmagic
MAGIC - Markov Affinity-Based Graph Imputation of Cells
Papers that mentioned: 6
cran: Rtsne
T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut Implementation
Papers that mentioned: 255
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
cran: shiny
Web Application Framework for R
Papers that mentioned: 127
cran: shinycssloaders
Add Loading Animations to a 'shiny' Output While It's Recalculating
Papers that mentioned: 14
pypi: kmeans
python wrapper for basic c implementation of kmeans
Papers that mentioned: 62
pypi: shiny
A web development framework for Python.
Papers that mentioned: 127