Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.12688/f1000research.2-264.v1

https://doi.org/10.12688/f1000research.2-264.v1

illuminaio: An open source IDAT parsing tool for Illumina microarrays

Cited by: 59
Author(s): Mike L. Smith, Keith A. Baggerly, Henrik Bengtsson, Matthew E. Ritchie, Kasper D. Hansen
Published: almost 11 years ago

Software Mentions 9

bioconductor: affxparser
Affymetrix File Parsing SDK
Papers that mentioned: 13
bioconductor: affyio
Tools for parsing Affymetrix data files
Papers that mentioned: 5
bioconductor: beadarray
Quality assessment and low-level analysis for Illumina BeadArray data
Papers that mentioned: 94
bioconductor: crlmm
Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays
Papers that mentioned: 6
bioconductor: illuminaio
Parsing Illumina Microarray Output Files
Papers that mentioned: 12
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: lumi
BeadArray Specific Methods for Illumina Methylation and Expression Microarrays
Papers that mentioned: 238
bioconductor: methylumi
Handle Illumina methylation data
Papers that mentioned: 75
bioconductor: minfi
Analyze Illumina Infinium DNA methylation arrays
Papers that mentioned: 506